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[184839_at]

Description T06C10.1 /REP_DB=WormBase Gene ID /WP=CE04899 /TR=Q22247 /GB=AAA82304.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 63      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 64      6grp_total > 64      4grp_total > 01      6grp_high1_sub > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 583
1 2 3 4 range
A 388.8
(-2.2)
P 		333.6
(-3)
P 		432.5
(-1.6)
P 		756.2
(3)
P 		423
B 406.7
(-1.5)
P 		286.2
(-3)
P 		431.6
(-1.1)
P 		754
(3)
P 		468
C 389.1
(-2.6)
P 		355.3
(-3)
P 		474.5
(-1.6)
P 		869.3
(3)
P 		514
avr 394.9
(-2.1) 		325
(-3) 		446.2
(-1.4) 		793.2
(3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1258
1 2 3 4 5 6 range
A 294.8
(-3)
P 		775.4
(-0.6)
P 		1503.8
(3)
P 		1140.3
(1.2)
P 		710.7
(-0.9)
P 		1005
(0.5)
P 		1209
B 272.9
(-3)
P 		684.4
(-0.1)
P 		1120.4
(3)
P 		752.2
(0.4)
P 		736
(0.3)
P 		903.7
(1.5)
P 		848
C 245.4
(-3)
P 		765
(-0.2)
P 		1355.1
(3)
P 		857.2
(0.3)
P 		732.2
(-0.4)
P 		1029.5
(1.2)
P 		1110
avr 271
(-3) 		741.6
(-0.3) 		1326.4
(3) 		916.6
(0.7) 		726.3
(-0.4) 		979.4
(1) 		1055
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 141.6
(3)
P 		72.4
(-3)
P 		113.1
(0.5)
P 		110.7
(0.3)
P 		69
B 129.7
(0.9)
P 		70.7
(-3)
P 		100
(-1)
P 		160.7
(3)
P 		90
C 128.8
(-0.5)
P 		102.2
(-3)
P 		165.4
(3)
P 		146.6
(1.2)
P 		63
avr 133.4
(2.4) 		81.8
(-3) 		126.2
(1.6) 		139.3
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 54.3
(-3)
P 		275.8
(1.9)
P 		327.5
(3)
P 		289.2
(2.2)
P 		214.5
(0.5)
P 		244.7
(1.2)
P 		273
B 94.9
(-3)
P 		227.8
(0.3)
P 		272.1
(1.4)
P 		199.2
(-0.4)
P 		299
(2.1)
P 		337
(3)
P 		242
C 91
(-3)
P 		233.4
(0.4)
P 		344.9
(3)
P 		172.4
(-1.1)
P 		236.9
(0.4)
P 		344.6
(3)
P 		254
avr 80.1
(-3) 		245.7
(1.2) 		314.8
(3) 		220.3
(0.6) 		250.1
(1.3) 		308.8
(2.8) 		235
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8382
Sequence Type Exemplar sequence
Representative Public ID T06C10.1 NCBI
Target Description T06C10.1 /REP_DB=WormBase Gene ID /WP=CE04899 /TR=Q22247 /GB=AAA82304.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171912
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55F2.1b.2 ENSEMBL cdna:known chromosome:CEL140:IV:7881585:7900225:1 gene:C55F2.1 None
C55F2.1b.1 ENSEMBL cdna:known chromosome:CEL140:IV:7882011:7900229:1 gene:C55F2.1 None
NM_171912 NCBI Caenorhabditis elegans C55F2.1b (transferase) mRNA, complete cds. A 
GENEFINDER00000037531 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7881987:7888149:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037523 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7881992-7885939(+) 100.0 100.0
Public Domain and Genome References
Ensembl C55F2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27234 Hypothetical protein C55F2.1b [Caenorhabditis elegans] ref|NP_741452.2| C55F2.1b [Caenorhabditis elegans] 0.0
blast CAE70902 Hypothetical protein CBG17698 [Caenorhabditis briggsae] 0.0
blast AAL27233 Hypothetical protein C55F2.1a [Caenorhabditis elegans] ref|NP_741451.2| C55F2.1a [Caenorhabditis elegans] 0.0
blast CAE70902 Hypothetical protein CBG17698 [Caenorhabditis briggsae] 4.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR002695 EMBL-EBI AICARFT/IMPCHase bienzyme 1.0E-126
Pfam IPR004362 EMBL-EBI Methylglyoxal synthase-like domain 7.9E-48
Pfam IPR002695 EMBL-EBI AICARFT/IMPCHase bienzyme 6.0E-16
Pfam IPR004362 EMBL-EBI Methylglyoxal synthase-like domain 7.9E-48
Sequence
Target Sequence 
>C. ELEGANS:184839_AT
tctgcatcctgccgttcatggaggaatcttggcaagagatacggaaagtgatcgaaagga
tctagagaaacacaacatttcattcgtctcagtggtggtttgcaacttgtatccattcaa
aaaaactgttcaatccaaggattgctctgtagaagaagctgttgagaacattgacattgg
aggagtcacgcttcttcgagcagctgccaagaatcacgaacgtgtcagtgtgatctgtga
tcctgctgactacgatcatatcatttcggagttcacttgccagttttttaattttattga
acatattttgagccaaaaatttacttgtttagagattattcggaaccagataacaatttc
ggatgtttccaaaaagtttcatgattttgagaacaactggaaaaccttggatgtggtgaa
aaacgttcagatttcacttctcgctccaaactttacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCATCCTGCCGTTCATGGAGGA 603 607 279 Antisense
AACACAACATTTCATTCGTCTCAGT 525 135 347 Antisense
CATTCGTCTCAGTGGTGGTTTGCAA 309 215 359 Antisense
GTGGTTTGCAACTTGTATCCATTCA 388 489 373 Antisense
GACATTGGAGGAGTCACGCTTCTTC 109 371 451 Antisense
GCAGCTGCCAAGAATCACGAACGTG 44 315 478 Antisense
GTCAGTGTGATCTGTGATCCTGCTG 315 467 502 Antisense
ATCCTGCTGACTACGATCATATCAT 542 39 518 Antisense
ATCATTTCGGAGTTCACTTGCCAGT 279 29 538 Antisense
AAACGTTCAGATTTCACTTCTCGCT 335 127 699 Antisense
TCACTTCTCGCTCCAAACTTTACGA 352 627 712 Antisense
Sequence Source Affymetrix Proprietary Database