[Home] | [Total List]

[184838_at] 7TM receptor, sre family

Description Y57A10C.3 /REP_DB=WormBase Gene ID /WP=CE18415 /TR=O62488 /GB=CAA19545.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 06      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 56.5
(0.8)
A 		5.5
(-3)
A 		10.6
(-2.6)
A 		86.3
(3)
A 		81
B 68.4
(3)
A 		4.7
(-3)
A 		55.1
(1.7)
A 		51.1
(1.4)
A 		64
C 43.2
(-0.5)
A 		28.8
(-1.6)
A 		11
(-3)
A 		87.7
(3)
A 		77
avr 56
(1.2) 		13
(-3) 		25.6
(-1.8) 		75
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 18.8
(-2.2)
A 		15.4
(-3)
A 		25.5
(-0.7)
A 		31.6
(0.7)
A 		41.9
(3)
A 		19.6
(-2)
A 		27
B 23.9
(-0.7)
A 		54
(3)
A 		34.5
(0.6)
A 		37.5
(1)
A 		46.3
(2)
A 		5.6
(-3)
A 		48
C 41.5
(0.4)
A 		16.2
(-3)
A 		33.9
(-0.6)
A 		60.5
(3)
A 		37.9
(-0.1)
A 		45.7
(1)
A 		44
avr 28.1
(-1.6) 		28.5
(-1.5) 		31.3
(-0.6) 		43.2
(3) 		42
(2.6) 		23.6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 20.6
(3)
A 		1.2
(-3)
A 		2.8
(-2.5)
A 		12.6
(0.5)
A 		19
B 21.8
(3)
A 		1.2
(-3)
A 		12.8
(0.4)
A 		10.9
(-0.2)
A 		21
C 14.3
(2.7)
A 		8.3
(-0.5)
A 		3.8
(-3)
A 		14.8
(3)
A 		11
avr 18.9
(3) 		3.6
(-3) 		6.5
(-1.9) 		12.8
(0.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.5
(-3)
A 		5.5
(-1.7)
A 		5.5
(-1.7)
A 		8
(-0)
A 		12.6
(3)
A 		4.8
(-2.1)
A 		9
B 8.3
(-0.8)
A 		18
(2.7)
A 		8.4
(-0.7)
A 		9.9
(-0.2)
A 		18.8
(3)
A 		2.1
(-3)
A 		17
C 15.4
(3)
A 		4.9
(-3)
A 		8.6
(-0.9)
A 		12.2
(1.2)
A 		12.3
(1.2)
A 		15.3
(2.9)
A 		11
avr 9.1
(-1.6) 		9.5
(-1.3) 		7.5
(-2.9) 		10
(-0.8) 		14.6
(3) 		7.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3086
Sequence Type Exemplar sequence
Representative Public ID Y57A10C.3 NCBI
Target Description Y57A10C.3 /REP_DB=WormBase Gene ID /WP=CE18415 /TR=O62488 /GB=CAA19545.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064235(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064235 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-27) (sre-27) mRNA, complete cds. 11/11 None
GENEFINDER00000005464 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12413341:12417415:-1 11/11 None
Y57A10C.3 ENSEMBL cdna:known chromosome:CEL140:II:12415484:12417430:-1 gene:Y57A10C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12415480-12417427(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-27
Ensembl Y57A10C.3
Entrez Gene 190348 Entrez gene
SwissProt O62488 EMBL-EBI
WormBase CE18415 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19545 Hypothetical protein Y57A10C.3 [Caenorhabditis elegans] ref|NP_496636.1| Serpentine Receptor, class E (epsilon) family member (sre-27) [Caenorhabditis elegans] sp|O62488|SRE27_CAEEL Serpentine receptor class epsilon-27 (Protein sre-27) 0.0
blast CAE73502 Hypothetical protein CBG20959 [Caenorhabditis briggsae] 1.0E-105
blast CAE73502 Hypothetical protein CBG20959 [Caenorhabditis briggsae] 1.0E-103
blast CAA98285 Hypothetical protein T07C12.6 [Caenorhabditis elegans] ref|NP_505560.1| Serpentine Receptor, class E (epsilon) family member (sre-28) [Caenorhabditis elegans] 2.0E-88
blast CAA98285 Hypothetical protein T07C12.6 [Caenorhabditis elegans] ref|NP_505560.1| Serpentine Receptor, class E (epsilon) family member (sre-28) [Caenorhabditis elegans] 4.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496636.1 7 26-48,60-79,125-147,167-189,194-216,257-276,291-310
Y57A10C.3 7 26-48,60-79,125-147,167-189,194-216,257-276,291-310
GENEFINDER00000005464 12 20-42,54-76,120-142,162-184,189-211,252-271,286-305,357-379,384-406,419-441,445-467,490-512
Sequence
Target Sequence 
>C. ELEGANS:184838_AT
ttccaaataatcgccatcacctgctcctgtttggctcttttccataaattcacgattatt
accataaacggcacttggattgtcagctgcgcttgctcttcaatcgttttctttcttgtg
gagcgaataaatttgagatggaaagctgaaatggagcatccgagacgggaaaaagtgtac
actatttctcagcgttttcaggtgaaggagaatattcgggcgttggatctcggaaaacgt
ctgattttctctgaacttggaacaatttcaataatcgggttgataattgccacacttcta
ctggaactggtacctccgtcactggttcatattgcagaaaatgcgctgttcttaaaccca
tttggcatttgcacagttgctatgtacagtatccctgcttggaagaagcggtacaaaaat
gcttttccatcaattttctgcttcctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCAAATAATCGCCATCACCTGCT 445 701 541 Antisense
CTCCTGTTTGGCTCTTTTCCATAAA 681 233 564 Antisense
ACGGCACTTGGATTGTCAGCTGCGC 40 95 608 Antisense
GTGTACACTATTTCTCAGCGTTTTC 130 487 715 Antisense
GAATATTCGGGCGTTGGATCTCGGA 276 325 750 Antisense
GGTTGATAATTGCCACACTTCTACT 205 507 818 Antisense
TCTACTGGAACTGGTACCTCCGTCA 518 613 837 Antisense
TACCTCCGTCACTGGTTCATATTGC 468 649 851 Antisense
TGCGCTGTTCTTAAACCCATTTGGC 42 585 882 Antisense
GCTATGTACAGTATCCCTGCTTGGA 171 301 919 Antisense
TTTCCATCAATTTTCTGCTTCCTAA 407 669 964 Antisense
Sequence Source Affymetrix Proprietary Database