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[184837_at]

Description Y113G7B.4 /REP_DB=WormBase Gene ID /WP=CE23286 /TR=Q9U2X9 /GB=CAB54326.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 440
1 2 3 4 range
A 115.5
(-3)
P 		171.1
(-2.2)
A 		173.7
(-2.2)
A 		550.6
(3)
P 		435
B 124.1
(-3)
P 		131.7
(-2.9)
A 		190.7
(-2.1)
A 		554.7
(3)
P 		431
C 115.2
(-3)
P 		143.9
(-2.6)
A 		171.6
(-2.2)
A 		544.3
(3)
P 		429
avr 118.3
(-3) 		148.9
(-2.6) 		178.7
(-2.2) 		549.9
(3) 		432

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 99.4
(-2.9)
A 		90.9
(-3)
A 		191.2
(-2.1)
P 		235.6
(-1.7)
P 		476.7
(0.5)
P 		744.6
(3)
P 		654
B 93.8
(-3)
M 		89.4
(-3)
A 		158.9
(-2.3)
A 		270.3
(-1.1)
P 		637.7
(2.8)
P 		656.6
(3)
P 		567
C 62.3
(-3)
P 		100.2
(-2.7)
A 		125.5
(-2.4)
P 		389.3
(-0.1)
P 		478.8
(0.7)
P 		744.5
(3)
P 		682
avr 85.2
(-3) 		93.5
(-2.9) 		158.5
(-2.3) 		298.4
(-1) 		531.1
(1.2) 		715.2
(3) 		630
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 42
(-2.3)
P 		37.1
(-3)
A 		45.4
(-1.9)
A 		80.6
(3)
P 		44
B 39.6
(-2.5)
P 		32.5
(-3)
A 		44.2
(-2.2)
A 		118.2
(3)
P 		86
C 38.1
(-3)
P 		41.4
(-2.6)
A 		59.8
(-0.6)
A 		91.8
(3)
P 		54
avr 39.9
(-2.7) 		37
(-3) 		49.8
(-1.7) 		96.9
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 18.3
(-3)
A 		32.3
(-2.5)
A 		41.6
(-2.1)
P 		59.8
(-1.5)
P 		143.8
(1.6)
P 		181.3
(3)
P 		163
B 32.6
(-2.9)
M 		29.8
(-3)
A 		38.6
(-2.8)
A 		71.6
(-1.9)
P 		259.1
(3)
P 		244.8
(2.6)
P 		229
C 23.1
(-3)
P 		30.6
(-2.8)
A 		32
(-2.8)
P 		78.3
(-1.5)
P 		154.9
(0.5)
P 		249.2
(3)
P 		226
avr 24.7
(-3) 		30.9
(-2.8) 		37.4
(-2.6) 		69.9
(-1.6) 		185.9
(1.8) 		225.1
(3) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184837_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13564
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.4 NCBI
Target Description Y113G7B.4 /REP_DB=WormBase Gene ID /WP=CE23286 /TR=Q9U2X9 /GB=CAB54326.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075494(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075494 NCBI Caenorhabditis elegans Y113G7B.4 (Y113G7B.4) mRNA, complete cds. 11/11 None
SNAP00000024709 ENSEMBL cdna:SNAP chromosome:CEL140:V:20195001:20200756:1 10/11 None
GENEFINDER00000024728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20195001:20198502:1 11/11 None
Y113G7B.4 ENSEMBL cdna:known chromosome:CEL140:V:20194966:20196173:1 gene:Y113G7B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20195000-20196173(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.4
Entrez Gene 180320 Entrez gene
SwissProt Q9U2X9 EMBL-EBI
WormBase CE23286 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 1.0E-179
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-176
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-170
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-168
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-165
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 1.0E-159
blast CAB54327 Hypothetical protein Y113G7B.5 [Caenorhabditis elegans] ref|NP_507896.1| Feminization Of Germline family member (fog-2) [Caenorhabditis elegans] 1.0E-105
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 2.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.9E-56
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.3E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.3E-58
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-54
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.3E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.3E-58
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-11
Sequence
Target Sequence 
>C. ELEGANS:184837_AT
gttatcgtctcttcatgtggaaattcaaaagaatttgtggagtggcttagagagatcacc
caatcaggaagtctgctccacacaaaaagaatcagggtcattgattgccctggagatctg
ctcggtgtcctttctcactgcaagcctggatttcttgaagccatcgaattttactgtttt
aactctggaaaaatcgatgaaattaccaatttggaacagtggaaacgtgctaaatcgatt
aatattgacagccgtagatgcgatgatattcccattgagcacttcttccatttttctcgt
tttaccatcagaatgggaaaactatcagttcctgatgcaattaaaattagagatgatctg
atgaaatccgctcacttcgaatacggaataatcgatatctatgatgaactgactccagaa
gctgcacgagttttcaatccgaatttcattgctcacaatcgcgatggtattgagaacaaa
atcgagcagtttcttctcacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCGTCTCTTCATGTGGAAATT 544 447 418 Antisense
GGCTTAGAGAGATCACCCAATCAGG 559 537 461 Antisense
CCCAATCAGGAAGTCTGCTCCACAC 354 257 476 Antisense
CATTGATTGCCCTGGAGATCTGCTC 475 217 516 Antisense
AGCCGTAGATGCGATGATATTCCCA 407 81 667 Antisense
TTCCATTTTTCTCGTTTTACCATCA 540 699 703 Antisense
AAATCCGCTCACTTCGAATACGGAA 182 117 781 Antisense
GATGAACTGACTCCAGAAGCTGCAC 579 411 820 Antisense
GAAGCTGCACGAGTTTTCAATCCGA 208 343 835 Antisense
AATCCGAATTTCATTGCTCACAATC 56 169 853 Antisense
AATCGAGCAGTTTCTTCTCACAATT 386 169 897 Antisense
Sequence Source Affymetrix Proprietary Database