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[184836_at]

Description H10D18.5 /REP_DB=WormBase Gene ID /WP=CE23802 /TR=Q9N5N2 /GB=AAF39877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 25      6grp_total > 29      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 423.2
(3)
P 		205.8
(-2.3)
P 		176.2
(-3)
A 		252.6
(-1.1)
P 		247
B 345.1
(3)
P 		175.8
(-1.8)
A 		132.7
(-3)
P 		283.3
(1.3)
P 		212
C 359.5
(3)
P 		241.1
(-1.2)
M 		189.9
(-3)
P 		212.4
(-2.2)
P 		170
avr 375.9
(3) 		207.6
(-1.8) 		166.3
(-3) 		249.4
(-0.6) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 439.5
(3)
P 		355.9
(1.1)
P 		201.4
(-2.4)
M 		173.5
(-3)
P 		309.1
(0.1)
P 		210.8
(-2.2)
P 		266
B 411.6
(3)
P 		305.1
(0.7)
P 		216.5
(-1.2)
P 		244.3
(-0.6)
P 		354.7
(1.8)
P 		132.8
(-3)
P 		279
C 623.5
(3)
P 		317.7
(-1)
P 		207.7
(-2.4)
P 		211.8
(-2.3)
P 		372.4
(-0.3)
P 		161.6
(-3)
P 		462
avr 491.5
(3) 		326.2
(-0.1) 		208.5
(-2.3) 		209.9
(-2.2) 		345.4
(0.3) 		168.4
(-3) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 154.1
(3)
P 		44.7
(-2.6)
P 		46.1
(-2.5)
A 		37
(-3)
P 		117
B 110
(3)
P 		43.4
(-2)
A 		30.8
(-3)
P 		60.4
(-0.8)
P 		79
C 119
(3)
P 		69.3
(-0.6)
M 		66.2
(-0.8)
P 		35.8
(-3)
P 		83
avr 127.7
(3) 		52.5
(-2.4) 		47.7
(-2.8) 		44.4
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 81
(-0.3)
P 		126.6
(3)
P 		43.9
(-3)
M 		44
(-3)
P 		93.3
(0.6)
P 		51.3
(-2.5)
P 		83
B 143.2
(2.9)
P 		101.6
(0.3)
P 		52.6
(-2.8)
P 		64.7
(-2)
P 		144.1
(3)
P 		49.5
(-3)
P 		95
C 231.1
(3)
P 		96.9
(-1.3)
P 		52.9
(-2.7)
P 		42.6
(-3)
P 		120.5
(-0.5)
P 		54.1
(-2.6)
P 		189
avr 151.8
(3) 		108.4
(0.4) 		49.8
(-3) 		50.4
(-3) 		119.3
(1.1) 		51.6
(-2.9) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15317
Sequence Type Exemplar sequence
Representative Public ID H10D18.5 NCBI
Target Description H10D18.5 /REP_DB=WormBase Gene ID /WP=CE23802 /TR=Q9N5N2 /GB=AAF39877.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071656(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071656 NCBI Caenorhabditis elegans H10D18.5 (H10D18.5) mRNA, complete cds. 10/11 None
SNAP00000043935 ENSEMBL cdna:SNAP chromosome:CEL140:V:3813841:3817412:-1 9/11 None
H10D18.5 ENSEMBL cdna:known chromosome:CEL140:V:3813841:3820028:-1 gene:H10D18.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043941 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043943 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043947 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3813840-3820028(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H10D18.5
Entrez Gene 186716 Entrez gene
SwissProt Q9N5N2 EMBL-EBI
WormBase CE35330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39877 Hypothetical protein H10D18.5 [Caenorhabditis elegans] ref|NP_504057.2| H10D18.5 [Caenorhabditis elegans] 1.0E-151
blast CAE58115 Hypothetical protein CBG01202 [Caenorhabditis briggsae] 1.0E-123
blast AAF39877 Hypothetical protein H10D18.5 [Caenorhabditis elegans] ref|NP_504057.2| H10D18.5 [Caenorhabditis elegans] 3.0E-52
blast CAE58115 Hypothetical protein CBG01202 [Caenorhabditis briggsae] 5.0E-49
blast AAF58539 CG13165-PA [Drosophila melanogaster] ref|NP_610754.1| CG13165-PA [Drosophila melanogaster] 6.0E-9
Sequence
Target Sequence 
>C. ELEGANS:184836_AT
atttacaagcattcaccgaggtcgtggaatttgagaaggatctcgttgatgaggtgtcca
acgcaaattctagaaaacgacattctatatgcaataaaaaactttgggatttcggaattt
tcaattttcaaaaaaaatacaatcacaaaaacggagtggctcagcgaccatttgcctata
tccttatgtgtgagtacggtagcattctgcacccttcaaatacaattcaagcactggata
tttgcgagaggctgagagttcggaattgtggacatattgcgttgtaccaggtccactccg
cttacacgtcgcctggacctcgtacctctgctcacaactcaccatcccgccaggcgagcg
cattcgcccaatcagctgcaacaaaacgtgctcagatgctccgcggcttttcacaagacg
tcgagccccagccaatccaagaatcctcaacattacgccggaatcgaatgctgcggaccc
gcgaaagatcattccagtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTACAAGCATTCACCGAGGTCGT 441 15 467 Antisense
GATGAGGTGTCCAACGCAAATTCTA 388 411 514 Antisense
AAACGGAGTGGCTCAGCGACCATTT 184 127 615 Antisense
CGACCATTTGCCTATATCCTTATGT 512 249 631 Antisense
TGAGTACGGTAGCATTCTGCACCCT 34 569 657 Antisense
ATATTGCGTTGTACCAGGTCCACTC 675 17 740 Antisense
ATTCGCCCAATCAGCTGCAACAAAA 440 9 828 Antisense
AACAAAACGTGCTCAGATGCTCCGC 568 133 846 Antisense
GAATCCTCAACATTACGCCGGAATC 109 331 907 Antisense
CGCCGGAATCGAATGCTGCGGACCC 584 257 922 Antisense
GACCCGCGAAAGATCATTCCAGTAC 707 381 942 Antisense
Sequence Source Affymetrix Proprietary Database