[Home] | [Total List]

[184835_at]

Description Y39E4B.14 /REP_DB=WormBase Gene ID /WP=CE21724 /TR=Q9U2J9 /GB=CAB54434.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 04      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 30.5
(-2.8)
A 		28.6
(-3)
A 		36.5
(-2.1)
A 		82.6
(3)
A 		54
B 55.9
(1.7)
A 		12.1
(-3)
A 		19
(-2.3)
A 		67.8
(3)
A 		56
C 40.7
(-1.7)
A 		42.8
(-1.5)
A 		23.1
(-3)
A 		102.8
(3)
A 		80
avr 42.4
(-1.3) 		27.8
(-2.8) 		26.2
(-3) 		84.4
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 62.7
(3)
A 		29
(-0.6)
A 		30.1
(-0.5)
A 		6.8
(-3)
A 		10.2
(-2.6)
A 		38.6
(0.4)
A 		56
B 29.3
(1.2)
A 		12.4
(-3)
A 		36.7
(3)
A 		35.8
(2.8)
A 		32.1
(1.9)
A 		22.7
(-0.5)
A 		24
C 51.3
(3)
A 		40.7
(1.6)
A 		42.4
(1.8)
A 		5.1
(-3)
A 		21.3
(-0.9)
A 		22.5
(-0.7)
A 		46
avr 47.8
(3) 		27.4
(-0.8) 		36.4
(0.9) 		15.9
(-3) 		21.2
(-2) 		27.9
(-0.7) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.1
(2)
A 		6.2
(-3)
A 		9.5
(0.4)
A 		12.1
(3)
A 		6
B 17.8
(3)
A 		3
(-3)
A 		4.4
(-2.4)
A 		14.5
(1.7)
A 		15
C 13.5
(0.5)
A 		12.3
(-0.3)
A 		8.1
(-3)
A 		17.3
(3)
A 		9
avr 14.1
(2.6) 		7.2
(-3) 		7.3
(-2.9) 		14.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.6
(3)
A 		10.3
(2.2)
A 		6.6
(-0)
A 		1.7
(-3)
A 		3.1
(-2.2)
A 		9.4
(1.7)
A 		10
B 10.2
(1.1)
A 		4.1
(-3)
A 		8.9
(0.2)
A 		9.5
(0.6)
A 		13.1
(3)
A 		8.5
(-0.1)
A 		9
C 19
(3)
A 		12.4
(0.8)
A 		10.8
(0.3)
A 		1
(-3)
A 		6.9
(-1)
A 		7.5
(-0.8)
A 		18
avr 13.6
(3) 		8.9
(0) 		8.8
(-0) 		4.1
(-3) 		7.7
(-0.7) 		8.5
(-0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7068
Sequence Type Exemplar sequence
Representative Public ID Y39E4B.14 NCBI
Target Description Y39E4B.14 /REP_DB=WormBase Gene ID /WP=CE21724 /TR=Q9U2J9 /GB=CAB54434.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012038 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13161628:13164380:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012015 7/11 Cross Hyb Matching Probes None
Y39E4B.14 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13161986-13164376(+) 100.0 100.0
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000012038 1 129-151
Sequence
Target Sequence 
>C. ELEGANS:184835_AT
tgccaactctttcgtacttcgatgagtacagaggaaggcgggtacagtgtcacttctgtt
tccaggaagtcgacggtagcactctgctcaatcatttcaaagacgacttgagagtatttc
ggtacccaagtaactcgtgttatggaatcgctgcaactggcgacgcattgagagcacatt
tgagacgcctccatttttattctcgtcctcctgcggtgcggggatttgatattgagcaga
gacgcatccgatctcagttgaagttcgatgagcatgagcacgatcctgactgggatatgg
aggacgttcaacaagaaaatcgctccaaagaggcaccggttgaagctgtgaatagccagg
atgccactagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCAACTCTTTCGTACTTCGATGA 229 587 38 Antisense
GGTACAGTGTCACTTCTGTTTCCAG 707 503 78 Antisense
CAGGAAGTCGACGGTAGCACTCTGC 396 209 100 Antisense
AGCACTCTGCTCAATCATTTCAAAG 258 77 115 Antisense
GAATCGCTGCAACTGGCGACGCATT 543 329 182 Antisense
TGAGAGCACATTTGAGACGCCTCCA 580 567 206 Antisense
AGACGCCTCCATTTTTATTCTCGTC 383 71 220 Antisense
GACGCATCCGATCTCAGTTGAAGTT 186 381 278 Antisense
GATGAGCATGAGCACGATCCTGACT 275 409 304 Antisense
AAATCGCTCCAAAGAGGCACCGGTT 61 119 354 Antisense
GTGAATAGCCAGGATGCCACTAGCC 114 481 385 Antisense
Sequence Source Affymetrix Proprietary Database