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[184834_s_at]

Description F26F12.4 /REP_DB=WormBase Gene ID /WP=CE07149 /TR=Q19809 /GB=AAC25891.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_high_8_8 > 46      6grp_highest_nonorm > 80      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 43.9
(-3)
P 		445.6
(3)
P 		427.2
(2.7)
P 		73.3
(-2.6)
A 		402
B 89
(-2.7)
A 		496.9
(3)
P 		418.7
(1.9)
P 		67.4
(-3)
A 		430
C 65.3
(-2.9)
P 		484.2
(3)
P 		365.8
(1.3)
P 		59.6
(-3)
P 		425
avr 66.1
(-3) 		475.6
(3) 		403.9
(1.9) 		66.8
(-3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 175.6
(-3)
P 		272.7
(3)
P 		212.6
(-0.7)
P 		241.2
(1.1)
P 		227.9
(0.2)
P 		198.7
(-1.6)
P 		97
B 227
(-0.9)
P 		333.5
(3)
P 		254
(0.1)
P 		260.6
(0.3)
P 		229.7
(-0.8)
P 		169.7
(-3)
P 		164
C 201.2
(-1.1)
P 		276.3
(3)
P 		167.7
(-3)
P 		264.1
(2.3)
P 		182.6
(-2.2)
P 		193.9
(-1.6)
P 		109
avr 201.3
(-2.2) 		294.2
(3) 		211.4
(-1.7) 		255.3
(0.8) 		213.4
(-1.5) 		187.4
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 16
(-2.7)
P 		96.7
(2.1)
P 		111.7
(3)
P 		10.7
(-3)
A 		101
B 28.4
(-2.2)
A 		122.7
(3)
P 		97
(1.6)
P 		14.4
(-3)
A 		108
C 21.6
(-2.5)
P 		139.2
(3)
P 		127.5
(2.5)
P 		10.1
(-3)
P 		129
avr 22
(-2.4) 		119.5
(3) 		112.1
(2.6) 		11.7
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 32.4
(-3)
P 		97
(3)
P 		46.3
(-1.7)
P 		61.2
(-0.3)
P 		68.8
(0.4)
P 		48.4
(-1.5)
P 		65
B 79
(-0.9)
P 		111
(3)
P 		61.7
(-3)
P 		69
(-2.1)
P 		93.3
(0.8)
P 		63.3
(-2.8)
P 		49
C 74.6
(1.6)
P 		84.3
(3)
P 		42.7
(-3)
P 		53.1
(-1.5)
P 		59.1
(-0.6)
P 		64.9
(0.2)
P 		42
avr 62
(-1.5) 		97.4
(3) 		50.2
(-3) 		61.1
(-1.6) 		73.7
(-0) 		58.9
(-1.9) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184834_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12474
Sequence Type Exemplar sequence
Representative Public ID F26F12.4 NCBI
Target Description F26F12.4 /REP_DB=WormBase Gene ID /WP=CE07149 /TR=Q19809 /GB=AAC25891.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072129(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072129 NCBI Caenorhabditis elegans F26F12.4 (F26F12.4) mRNA, complete cds. 11/11 None
SNAP00000007010 ENSEMBL cdna:SNAP chromosome:CEL140:V:5866874:5870515:-1 10/11 None
GENEFINDER00000007011 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5868991:5870740:-1 11/11 None
F26F12.4 ENSEMBL cdna:known chromosome:CEL140:V:5868744:5870546:-1 gene:F26F12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5868990-5870515(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F12.4
Entrez Gene 178975 Entrez gene
SwissProt Q19809 EMBL-EBI
WormBase CE07149 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504530 F26F12.4 [Caenorhabditis elegans] gb|AAC25891.1| Hypothetical protein F26F12.4 [Caenorhabditis elegans] 2.0E-75
blast NP_504530 F26F12.4 [Caenorhabditis elegans] gb|AAC25891.1| Hypothetical protein F26F12.4 [Caenorhabditis elegans] 5.0E-75
blast CAE64555 Hypothetical protein CBG09303 [Caenorhabditis briggsae] 4.0E-73
blast CAE64555 Hypothetical protein CBG09303 [Caenorhabditis briggsae] 1.0E-72
blast NP_504530 F26F12.4 [Caenorhabditis elegans] gb|AAC25891.1| Hypothetical protein F26F12.4 [Caenorhabditis elegans] 1.0E-65
blast CAE64555 Hypothetical protein CBG09303 [Caenorhabditis briggsae] 3.0E-63
blast NP_001023858 F26F12.5b [Caenorhabditis elegans] gb|AAQ62457.1| Hypothetical protein F26F12.5b [Caenorhabditis elegans] 2.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504530.1 1 88-110
F26F12.4 1 88-110
SNAP00000007010 3 88-110,180-202,222-244
GENEFINDER00000007011 1 135-157
Sequence
Target Sequence 
>C. ELEGANS:184834_S_AT
aacagtaatgttgcacagctccagcaaatgggtcaagtggctggaacaggaccagatgag
gtttttcaacatggaactattgggaaattcatcagaatggaattggaaggaggcttctca
tcattcgttcgatgcatttacgaagcgaagcgaacgaataacaacacagtaacactggta
tgtgaacgagatcaagagtgctgtgagcacggatgctgtccaaaggatcagcattggatg
gctggagtctacgttcttttggcgttcgttcttctggtatttgtggttggaacgtgtctc
atgatttgttgttatcagagatcaaagaatcgtcagcgaaaagaggagttagaggccgct
gaattcagaaatgcgggtggatatgctccgtctcaggtgggcggtggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAGTAATGTTGCACAGCTCCAGC 16 137 28 Antisense
GCACAGCTCCAGCAAATGGGTCAAG 504 317 40 Antisense
GAAGGAGGCTTCTCATCATTCGTTC 303 333 133 Antisense
GTGCTGTGAGCACGGATGCTGTCCA 331 479 225 Antisense
ATTGGATGGCTGGAGTCTACGTTCT 621 3 260 Antisense
TGGAGTCTACGTTCTTTTGGCGTTC 386 549 270 Antisense
CGTTCGTTCTTCTGGTATTTGTGGT 567 237 290 Antisense
GTGGTTGGAACGTGTCTCATGATTT 389 487 310 Antisense
GAGGAGTTAGAGGCCGCTGAATTCA 57 405 370 Antisense
AATGCGGGTGGATATGCTCCGTCTC 291 165 397 Antisense
CTCCGTCTCAGGTGGGCGGTGGAGC 373 233 413 Antisense
Sequence Source Affymetrix Proprietary Database