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[184833_at]

Description Y42G9A.1 /REP_DB=WormBase Gene ID /WP=CE24274 /TR=Q9N4Z2 /GB=AAF60556.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 145.6
(3)
A 		112.2
(-0.9)
A 		94.1
(-3)
A 		134.7
(1.7)
A 		52
B 116.9
(-1.5)
A 		86.2
(-3)
A 		150.8
(0.1)
A 		210.1
(3)
M 		124
C 118.4
(0.5)
A 		53.5
(-3)
A 		131.1
(1.1)
A 		165.8
(3)
A 		112
avr 127
(-0) 		84
(-3) 		125.3
(-0.1) 		170.2
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 54.6
(-3)
A 		108.6
(-0.3)
A 		175.3
(3)
A 		150.7
(1.8)
A 		92.6
(-1.1)
A 		135.3
(1)
A 		121
B 111.5
(-1)
A 		75.3
(-3)
A 		125.8
(-0.2)
A 		183.3
(3)
A 		141.1
(0.7)
A 		80.3
(-2.7)
A 		108
C 93.5
(-3)
A 		98
(-2.2)
A 		108
(-0.5)
A 		111.1
(0)
A 		128.7
(3)
A 		112.3
(0.2)
A 		35
avr 86.5
(-3) 		94
(-2.3) 		136.4
(1.8) 		148.4
(3) 		120.8
(0.3) 		109.3
(-0.8) 		62
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 53
(3)
A 		24.4
(-2.2)
A 		24.6
(-2.1)
A 		19.7
(-3)
A 		33
B 37.3
(1.1)
A 		21.3
(-3)
A 		35
(0.5)
A 		44.8
(3)
M 		24
C 39.2
(1.7)
A 		15.4
(-3)
A 		45.7
(3)
A 		28
(-0.5)
A 		30
avr 43.2
(3) 		20.4
(-3) 		35.1
(0.9) 		30.8
(-0.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 10.1
(-3)
A 		38.6
(3)
A 		38.2
(2.9)
A 		38.2
(2.9)
A 		27.9
(0.7)
A 		32.9
(1.8)
A 		29
B 38.8
(-0.4)
A 		25.1
(-3)
A 		30.6
(-2)
A 		48.5
(1.4)
A 		57.3
(3)
A 		29.9
(-2.1)
A 		32
C 34.6
(0.8)
A 		29.9
(-0.6)
A 		27.5
(-1.4)
A 		22.3
(-3)
A 		41.6
(3)
A 		37.6
(1.8)
A 		19
avr 27.8
(-3) 		31.2
(-1.6) 		32.1
(-1.2) 		36.3
(0.5) 		42.3
(3) 		33.5
(-0.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7079
Sequence Type Exemplar sequence
Representative Public ID Y42G9A.1 NCBI
Target Description Y42G9A.1 /REP_DB=WormBase Gene ID /WP=CE24274 /TR=Q9N4Z2 /GB=AAF60556.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065932 NCBI Caenorhabditis elegans Y42G9A.1 (Y42G9A.1) mRNA, complete cds. 11/11 None
Y42G9A.1 ENSEMBL cdna:known chromosome:CEL140:III:6149956:6155139:1 gene:Y42G9A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011641 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6149954-6154672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42G9A.1
Entrez Gene 175867 Entrez gene
SwissProt Q9N4Z2 EMBL-EBI
WormBase CE24274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498333 Y42G9A.1 [Caenorhabditis elegans] gb|AAF60556.1| Hypothetical protein Y42G9A.1 [Caenorhabditis elegans] 1.0E-144
blast CAE73624 Hypothetical protein CBG21118 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:184833_AT
aaataaattcgagcccagcacacctctgtcgtttcaaccgggattcgattctcagagctc
tctttcaacgacttcagagagccaaaattttgtggtgaccccaacaactcttagcagttt
attgaacaatcacacacggaagaatcacattgaaatgctggctccactagcgtccgaaga
ggagttgatgagatttcctgcggaacgacagtttgatctaatgcaaattggatttagtta
cgatgaagtgaagcagttgctggaaatgtttgaaaaattcaagaatgacgttcaagagat
taacaggcttcatacattgacacagatcctgaatcaattttgcaactacatctcaatgta
cgcaccacccaatctgaaaatgatatcatcggcgttcaatttgctagaacttggaaactc
agctcatgaagtgaaaagggttttactgaaagcgcgtcgtcgtgaagaatcagaagaatc
agatgtttcattttccaaaaagccacgtccttcttctagatctcctgcatctccaaatcg
agatgatctattgttgggactcgatcgttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAAATTCGAGCCCAGCACACCT 284 115 315 Antisense
CTCTGTCGTTTCAACCGGGATTCGA 517 231 338 Antisense
GGATTCGATTCTCAGAGCTCTCTTT 477 509 355 Antisense
GAGCTCTCTTTCAACGACTTCAGAG 454 387 369 Antisense
TTTTGTGGTGACCCCAACAACTCTT 557 677 402 Antisense
ATTGAAATGCTGGCTCCACTAGCGT 556 5 463 Antisense
TACGCACCACCCAATCTGAAAATGA 686 647 673 Antisense
GATATCATCGGCGTTCAATTTGCTA 116 427 696 Antisense
GTTTTACTGAAAGCGCGTCGTCGTG 491 433 754 Antisense
GATCTCCTGCATCTCCAAATCGAGA 633 415 833 Antisense
TATTGTTGGGACTCGATCGTTCTCC 352 663 863 Antisense
Sequence Source Affymetrix Proprietary Database