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[184832_at]

Description Y113G7B.8 /REP_DB=WormBase Gene ID /WP=CE23290 /TR=Q9U2X5 /GB=CAB54330.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 6.9
(-2.3)
A 		10.2
(-0.9)
A 		5.3
(-3)
A 		19.3
(3)
A 		14
B 26
(0.1)
A 		27.3
(0.4)
A 		6
(-3)
A 		44.1
(3)
A 		38
C 6.2
(-3)
A 		12.6
(-1.2)
A 		27
(3)
A 		17.1
(0.1)
A 		21
avr 13
(-2.9) 		16.7
(-1.3) 		12.8
(-3) 		26.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 29.1
(2)
A 		3.6
(-3)
A 		11.3
(-1.5)
A 		27.2
(1.6)
A 		34.1
(3)
A 		5.3
(-2.7)
A 		31
B 35.9
(3)
A 		3.3
(-2.9)
A 		2.9
(-3)
A 		3.3
(-2.9)
A 		3.2
(-2.9)
A 		17.5
(-0.3)
A 		33
C 8.6
(-2)
A 		31.6
(2)
A 		4.7
(-2.7)
A 		6.3
(-2.4)
A 		3.1
(-3)
A 		37.3
(3)
A 		34
avr 24.5
(3) 		12.8
(-0.9) 		6.3
(-3) 		12.3
(-1) 		13.5
(-0.6) 		20
(1.5) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.5
(1.7)
A 		2.2
(0.4)
A 		1.4
(-3)
A 		2.8
(3)
A 		1
B 8.3
(2.2)
A 		6.8
(1.1)
A 		1.4
(-3)
A 		9.4
(3)
A 		8
C 2.1
(-3)
A 		3.6
(-1.8)
A 		9.4
(3)
A 		2.9
(-2.3)
A 		7
avr 4.3
(-1.7) 		4.2
(-2.3) 		4.1
(-3) 		5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.4
(-0.3)
A 		1.3
(-3)
A 		2.5
(-2.2)
A 		6.9
(0.7)
A 		10.3
(3)
A 		1.3
(-3)
A 		9
B 12.5
(3)
A 		1.1
(-2.8)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		1.3
(-2.7)
A 		6.5
(-0.1)
A 		12
C 3.2
(-1.9)
A 		9.7
(1.5)
A 		1.2
(-2.9)
A 		1.3
(-2.8)
A 		1
(-3)
A 		12.5
(3)
A 		12
avr 7
(3) 		4
(-0.3) 		1.5
(-3) 		3
(-1.4) 		4.2
(-0.1) 		6.8
(2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12702
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.8 NCBI
Target Description Y113G7B.8 /REP_DB=WormBase Gene ID /WP=CE23290 /TR=Q9U2X5 /GB=CAB54330.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075498 NCBI Caenorhabditis elegans Y113G7B.8 (Y113G7B.8) mRNA, complete cds. 11/11 None
SNAP00000024708 ENSEMBL cdna:SNAP chromosome:CEL140:V:20194352:20204177:-1 11/11 None
Y113G7B.8 ENSEMBL cdna:known chromosome:CEL140:V:20202565:20204177:-1 gene:Y113G7B.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20202564-20204177(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.8
Entrez Gene 190973 Entrez gene
SwissProt Q9U2X5 EMBL-EBI
WormBase CE23290 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54330 Hypothetical protein Y113G7B.8 [Caenorhabditis elegans] ref|NP_507899.1| Y113G7B.8 [Caenorhabditis elegans] 1.0E-153
blast CAB54330 Hypothetical protein Y113G7B.8 [Caenorhabditis elegans] ref|NP_507899.1| Y113G7B.8 [Caenorhabditis elegans] 1.0E-148
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 1.0E-28
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 2.0E-28
blast CAB04471 Hypothetical protein F55C9.8 [Caenorhabditis elegans] ref|NP_507757.1| F55C9.8 [Caenorhabditis elegans] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.5E-5
Sequence
Target Sequence 
>C. ELEGANS:184832_AT
gcaactcagccaagtgctcatcgaatggaacccaaacgaagttgacctaaaacaattgtt
ggagcactgcatgcacattttccacgaacattctgtcagcactttaatgatatcagaagg
gcttcagaactggcggcccattcacaccgccttgagcagctgggagtgtaaatctgcaat
actaagatcggcaagtgatgacacctggtttcagaaaaccatagatagaattctgattgt
ctccttcctcccaatgccaatggaaactaggaatgcgtgtcggcggattattgcctgtcc
acggaaggatacagtgtggttcatgccatacacattctctgacttattgtctacaagtag
tgagcgtgtctcatcaatggcacccatcagtgcagaagactacaatttgttcctcaggct
ctgggctcacgggtcaaatccagctctaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTCAGCCAAGTGCTCATCGAA 26 321 213 Antisense
GTTGGAGCACTGCATGCACATTTTC 156 437 270 Antisense
TTCCACGAACATTCTGTCAGCACTT 605 699 292 Antisense
CTTCAGAACTGGCGGCCCATTCACA 437 219 334 Antisense
CACCGCCTTGAGCAGCTGGGAGTGT 327 201 357 Antisense
ATAGAATTCTGATTGTCTCCTTCCT 177 23 437 Antisense
TCCTTCCTCCCAATGCCAATGGAAA 58 591 454 Antisense
GTGTCGGCGGATTATTGCCTGTCCA 55 487 489 Antisense
GTTCATGCCATACACATTCTCTGAC 567 443 531 Antisense
TGAGCGTGTCTCATCAATGGCACCC 625 569 573 Antisense
CTCACGGGTCAAATCCAGCTCTAAA 628 227 638 Antisense
Sequence Source Affymetrix Proprietary Database