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[184831_at]

Description C18B10.1 /REP_DB=WormBase Gene ID /WP=CE17416 /TR=P91077 /GB=AAK18891.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 36.1
(-3)
A 		66.1
(-0.2)
A 		35.7
(-3)
A 		100.9
(3)
A 		65
B 30.6
(-0.7)
A 		25.8
(-1.2)
A 		8.5
(-3)
A 		67.1
(3)
A 		59
C 48.2
(-0.9)
A 		17.7
(-2.6)
A 		9.7
(-3)
A 		119
(3)
A 		109
avr 38.3
(-1.4) 		36.5
(-1.6) 		18
(-3) 		95.7
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 23.9
(1.2)
A 		4.3
(-3)
A 		30.7
(2.7)
A 		12.5
(-1.2)
A 		32.3
(3)
A 		11.2
(-1.5)
A 		28
B 26.7
(0.7)
A 		29.8
(1.3)
A 		9.2
(-3)
A 		17.5
(-1.3)
A 		37.7
(3)
A 		21.4
(-0.4)
A 		29
C 9.2
(-2.5)
A 		65.5
(3)
P 		20
(-1.4)
A 		3.9
(-3)
A 		16.8
(-1.7)
A 		31.3
(-0.3)
A 		62
avr 19.9
(-0.6) 		33.2
(3) 		20
(-0.6) 		11.3
(-3) 		28.9
(1.8) 		21.3
(-0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13.1
(1.1)
A 		14.4
(2.6)
A 		9.3
(-3)
A 		14.8
(3)
A 		6
B 9.8
(0.8)
A 		6.4
(-0.9)
A 		2
(-3)
A 		14.3
(3)
A 		12
C 16
(1.5)
A 		5.1
(-2.4)
A 		3.4
(-3)
A 		20.1
(3)
A 		17
avr 13
(1.2) 		8.6
(-1.1) 		4.9
(-3) 		16.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.4
(-0.9)
A 		1.5
(-3)
A 		6.7
(0.8)
A 		3.2
(-1.8)
A 		9.7
(3)
A 		2.7
(-2.1)
A 		8
B 9.3
(0.3)
A 		9.9
(0.5)
A 		2.2
(-3)
A 		4.6
(-1.9)
A 		15.3
(3)
A 		8
(-0.3)
A 		13
C 3.4
(-2.2)
A 		20
(3)
P 		5.1
(-1.7)
A 		0.8
(-3)
A 		5.4
(-1.6)
A 		10.5
(0)
A 		19
avr 5.7
(-0.8) 		10.5
(3) 		4.7
(-1.6) 		2.9
(-3) 		10.1
(2.7) 		7.1
(0.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11519
Sequence Type Exemplar sequence
Representative Public ID C18B10.1 NCBI
Target Description C18B10.1 /REP_DB=WormBase Gene ID /WP=CE17416 /TR=P91077 /GB=AAK18891.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072528 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-11) (srbc-11) mRNA, complete cds. 11/11 None
C18B10.1 ENSEMBL cdna:known chromosome:CEL140:V:7496562:7497879:-1 gene:C18B10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022593 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022594 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7496562-7497880(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-11
Ensembl C18B10.1
Entrez Gene 182768 Entrez gene
SwissProt P91077 EMBL-EBI
WormBase CE17416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18891 Serpentine receptor, class bc (class b-like) protein 11 [Caenorhabditis elegans] ref|NP_504929.1| Serpentine Receptor, class BC (class B-like) family member (srbc-11) [Caenorhabditis elegans] 1.0E-167
blast AAK18886 Serpentine receptor, class bc (class b-like) protein 10 [Caenorhabditis elegans] ref|NP_504928.1| Serpentine Receptor, class BC (class B-like) family member (srbc-10) [Caenorhabditis elegans] 1.0E-117
blast AAC27086 Serpentine receptor, class bc (class b-like) protein 2 [Caenorhabditis elegans] ref|NP_503940.2| Serpentine Receptor, class BC (class B-like) family member (srbc-2) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.0E-108
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504929.1 7 18-40,53-75,90-112,132-154,188-210,223-245,260-282
C18B10.1 7 18-40,53-75,90-112,132-154,188-210,223-245,260-282
Sequence
Target Sequence 
>C. ELEGANS:184831_AT
tgggatttcctttgcaaaccactgcagctatccgaatgacgattgcagtagctatttcaa
ttgagagagttctggctgtgttcacacctatcaccttccataactatcgccacttgtgtc
ctacagtaatcgttcttattttggcaataagcctggggactcttgaaaatttagtccttt
ttcaatcatgtacactaaatctctctaacattccaaaaaactgcggcgtattgagatgtg
cagtggacgcttgtttcttctcctactgggcaagcgatagatcagcaatgtttgcactaa
acttcatattctctggccttctctccatcaagcttattttcttcaacaaacctcaacacg
gaaatggacacaaggagcattcaaaaataaatcatctggccttgctggatgcagctaacg
tgtttctatgtgatttcctcccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGATTTCCTTTGCAAACCACTGC 607 553 293 Antisense
AACCACTGCAGCTATCCGAATGACG 424 145 309 Antisense
TTCTGGCTGTGTTCACACCTATCAC 487 693 362 Antisense
TATCGCCACTTGTGTCCTACAGTAA 251 659 397 Antisense
GTACACTAAATCTCTCTAACATTCC 350 461 482 Antisense
GAGATGTGCAGTGGACGCTTGTTTC 34 397 525 Antisense
TTCTTCTCCTACTGGGCAAGCGATA 55 689 547 Antisense
TAAACTTCATATTCTCTGGCCTTCT 310 641 590 Antisense
CTTCTCTCCATCAAGCTTATTTTCT 396 221 610 Antisense
TCATCTGGCCTTGCTGGATGCAGCT 381 621 684 Antisense
TGTTTCTATGTGATTTCCTCCCAAC 545 561 713 Antisense
Sequence Source Affymetrix Proprietary Database