[Home] | [Total List]

[184830_at]

Description Y102A5C.3 /REP_DB=WormBase Gene ID /WP=CE19289 /TR=Q9XX91 /GB=CAA20944.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 33.2
(3)
A 		23.2
(0.4)
A 		10.2
(-3)
A 		28
(1.6)
A 		23
B 24.2
(-1.6)
A 		15.5
(-2.4)
A 		8
(-3)
A 		78
(3)
A 		70
C 2.5
(-3)
A 		15.7
(-2.3)
A 		15.4
(-2.3)
A 		115.4
(3)
A 		113
avr 20
(-2.2) 		18.1
(-2.3) 		11.2
(-3) 		73.8
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 4.4
(-3)
A 		47.8
(0.5)
A 		25.8
(-1.3)
A 		40.5
(-0.1)
A 		32.4
(-0.7)
A 		78.5
(3)
A 		74
B 8.5
(-3)
A 		23.5
(-1.8)
A 		9.3
(-2.9)
A 		37.5
(-0.7)
A 		27.2
(-1.5)
A 		84.8
(3)
A 		76
C 14.9
(-2.3)
A 		47.4
(-0)
A 		89.9
(3)
A 		5.5
(-3)
A 		25.7
(-1.6)
A 		74.9
(1.9)
A 		84
avr 9.3
(-3) 		39.6
(-0.4) 		41.7
(-0.2) 		27.8
(-1.4) 		28.4
(-1.4) 		79.4
(3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.1
(3)
A 		5
(-1.5)
A 		2.7
(-3)
A 		4.1
(-2.1)
A 		9
B 7.7
(-0.6)
A 		3.8
(-2.2)
A 		1.9
(-3)
A 		16.6
(3)
A 		15
C 0.8
(-3)
A 		4.5
(-1.8)
A 		5.4
(-1.5)
A 		19.4
(3)
A 		19
avr 6.9
(-0.9) 		4.4
(-2.3) 		3.3
(-3) 		13.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 0.8
(-3)
A 		17
(2.3)
A 		5.6
(-1.4)
A 		10.3
(0.1)
A 		9.8
(-0)
A 		19.1
(3)
A 		18
B 3
(-2.8)
A 		7.8
(-1.9)
A 		2.2
(-3)
A 		9.9
(-1.4)
A 		11
(-1.2)
A 		31.6
(3)
A 		29
C 5.5
(-1.9)
A 		14.5
(0.4)
A 		22.9
(2.5)
A 		1.1
(-3)
A 		8.3
(-1.2)
A 		25.1
(3)
A 		24
avr 3.1
(-3) 		13.1
(-0.3) 		10.2
(-1.1) 		7.1
(-1.9) 		9.7
(-1.2) 		25.3
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13269
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.3 NCBI
Target Description Y102A5C.3 /REP_DB=WormBase Gene ID /WP=CE19289 /TR=Q9XX91 /GB=CAA20944.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074876 NCBI Caenorhabditis elegans Y102A5C.3 (Y102A5C.3) mRNA, complete cds. 11/11 None
SNAP00000003142 ENSEMBL cdna:SNAP chromosome:CEL140:V:16922360:16922902:-1 10/11 None
GENEFINDER00000003198 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16922360:16923901:-1 11/11 None
Y102A5C.3 ENSEMBL cdna:known chromosome:CEL140:V:16922360:16923901:-1 gene:Y102A5C.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y102A5C.11 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16922359-16923901(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5C.3
Entrez Gene 190830 Entrez gene
SwissProt Q9XX91 EMBL-EBI
WormBase CE19289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20944 Hypothetical protein Y102A5C.3 [Caenorhabditis elegans] ref|NP_507277.1| Y102A5C.3 [Caenorhabditis elegans] 0.0
blast AAB93315 Hypothetical protein ZK1290.9 [Caenorhabditis elegans] ref|NP_495583.2| ZK1290.9 [Caenorhabditis elegans] sp|Q09336|YOF9_CAEEL Hypothetical protein ZK1290.9 in chromosome II 2.0E-83
blast CAA20956 Hypothetical protein Y102A5C.12 [Caenorhabditis elegans] ref|NP_507283.1| Y102A5C.12 [Caenorhabditis elegans] 5.0E-76
blast CAA20944 Hypothetical protein Y102A5C.3 [Caenorhabditis elegans] ref|NP_507277.1| Y102A5C.3 [Caenorhabditis elegans] 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.6E-39
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 8.1E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.5E-41
Sequence
Target Sequence 
>C. ELEGANS:184830_AT
aacaaactcgtggagcccgaatcgctcgaggagctggattttgaaattagaaacggatcg
attggctacgaacacgttgtgaatacggaacaatggaaaatggcaaagtatttaaaatca
tgggaagaaacctccattccaatcgaacatttgcttcatttcactacttttaccgtgcga
ttgacggaattcactgtggaagatgccaggaaaattcgcgatatgctcgacacctctggc
acttttgaaaaagcaaagatcactgtgaaaacaatcgattccatcgaaatcgcgagagta
tttgtcccggattttgaacttggcgctgacgaaaatggaaacgaaaaattctactacaca
accgcgaagggcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAAACTCGTGGAGCCCGAATCGC 593 133 565 Antisense
AGCCCGAATCGCTCGAGGAGCTGGA 38 83 578 Antisense
ACGGATCGATTGGCTACGAACACGT 663 95 617 Antisense
GAAACCTCCATTCCAATCGAACATT 133 357 691 Antisense
AACATTTGCTTCATTTCACTACTTT 607 137 710 Antisense
TCACTACTTTTACCGTGCGATTGAC 25 627 725 Antisense
AAATTCGCGATATGCTCGACACCTC 461 115 776 Antisense
TCGACACCTCTGGCACTTTTGAAAA 162 601 791 Antisense
ATCGCGAGAGTATTTGTCCCGGATT 160 37 853 Antisense
GTCCCGGATTTTGAACTTGGCGCTG 300 439 868 Antisense
TCTACTACACAACCGCGAAGGGCAG 148 611 914 Antisense
Sequence Source Affymetrix Proprietary Database