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[184829_at]

Description F07G11.1 /REP_DB=WormBase Gene ID /WP=CE09222 /TR=O16235 /GB=AAG24050.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 35      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.8
(-2.9)
A 		31.6
(3)
A 		1.5
(-3)
A 		16.7
(0)
A 		30
B 14.3
(3)
A 		11.6
(1.7)
A 		2.3
(-3)
A 		13.1
(2.4)
A 		12
C 1.4
(-3)
A 		26.9
(3)
A 		2.5
(-2.7)
A 		12.6
(-0.4)
A 		26
avr 5.8
(-2) 		23.4
(3) 		2.1
(-3) 		14.1
(0.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 896
1 2 3 4 5 6 range
A 1.8
(-3)
A 		11.4
(-2.9)
A 		36.8
(-2.8)
A 		897.8
(3)
P 		640.1
(1.3)
P 		36.8
(-2.8)
P 		896
B 15
(-3)
A 		23.3
(-2.9)
A 		45.3
(-2.8)
P 		725.2
(2.8)
P 		750.6
(3)
P 		62.5
(-2.6)
P 		736
C 7
(-3)
A 		8
(-3)
A 		58.2
(-2.6)
P 		779.1
(3)
P 		647.5
(2)
P 		59.7
(-2.6)
P 		772
avr 7.9
(-3) 		14.2
(-3) 		46.8
(-2.7) 		800.7
(3) 		679.4
(2.1) 		53
(-2.7) 		793
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-2.8)
A 		6.9
(3)
A 		0.4
(-3)
A 		2.4
(-1.2)
A 		7
B 4.5
(3)
A 		2.9
(0.6)
A 		0.5
(-3)
A 		2.8
(0.5)
A 		4
C 0.5
(-3)
A 		7.7
(3)
A 		0.9
(-2.7)
A 		2.1
(-1.7)
A 		7
avr 1.9
(-1.5) 		5.8
(3) 		0.6
(-3) 		2.4
(-0.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 0.3
(-3)
A 		4.1
(-2.9)
A 		8
(-2.8)
A 		227.7
(3)
P 		193.1
(2.1)
P 		9
(-2.8)
P 		227
B 5.2
(-3)
A 		7.8
(-2.9)
A 		11
(-2.9)
P 		192.1
(0.7)
P 		305
(3)
P 		23.3
(-2.6)
P 		300
C 2.6
(-3)
A 		2.4
(-3)
A 		14.8
(-2.6)
P 		156.7
(1.5)
P 		209.5
(3)
P 		20
(-2.5)
P 		207
avr 2.7
(-3) 		4.8
(-2.9) 		11.3
(-2.8) 		192.2
(1.9) 		235.9
(3) 		17.4
(-2.6) 		233
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11501
Sequence Type Exemplar sequence
Representative Public ID F07G11.1 NCBI
Target Description F07G11.1 /REP_DB=WormBase Gene ID /WP=CE09222 /TR=O16235 /GB=AAG24050.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072459 NCBI Caenorhabditis elegans F07G11.1 (F07G11.1) mRNA, complete cds. 11/11 None
SNAP00000010039 ENSEMBL cdna:SNAP chromosome:CEL140:V:7310176:7312149:1 10/11 None
GENEFINDER00000010044 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7307296:7314349:1 10/11 None
F07G11.1 ENSEMBL cdna:known chromosome:CEL140:V:7309982:7312149:1 gene:F07G11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7309982-7312150(+) 98.01 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G11.1
Entrez Gene 184156 Entrez gene
SwissProt O16235 EMBL-EBI
WormBase CE09222 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504860 F07G11.1 [Caenorhabditis elegans] gb|AAG24050.1| Hypothetical protein F07G11.1 [Caenorhabditis elegans] 0.0
blast AAB69880 Hypothetical protein C13A2.9 [Caenorhabditis elegans] ref|NP_504845.1| C13A2.9 [Caenorhabditis elegans] 1.0E-140
blast NP_504860 F07G11.1 [Caenorhabditis elegans] gb|AAG24050.1| Hypothetical protein F07G11.1 [Caenorhabditis elegans] 1.0E-139
blast NP_504858 F07G11.2 [Caenorhabditis elegans] gb|AAG24049.1| Hypothetical protein F07G11.2 [Caenorhabditis elegans] 1.0E-131
blast AAB69882 Hypothetical protein C13A2.10 [Caenorhabditis elegans] ref|NP_504848.1| C13A2.10 [Caenorhabditis elegans] 1.0E-124
blast AAB69880 Hypothetical protein C13A2.9 [Caenorhabditis elegans] ref|NP_504845.1| C13A2.9 [Caenorhabditis elegans] 1.0E-120
blast NP_504860 F07G11.1 [Caenorhabditis elegans] gb|AAG24050.1| Hypothetical protein F07G11.1 [Caenorhabditis elegans] 1.0E-120
blast CAA99877 Hypothetical protein K01D12.3 [Caenorhabditis elegans] ref|NP_506101.1| K01D12.3 [Caenorhabditis elegans] 2.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 5.4E-58
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.2E-6
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.5E-26
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 2.4E-54
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 3.2E-6
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 7.5E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504860.1 1 30-52
F07G11.1 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:184829_AT
gctgaggttaaatacatcgcgcttcccaataagaaggaacaattgacaatggttactttg
ggaatcggtcatgatgttaaagcagagatacgactgaaagagttatatccaaatattgat
tttcacggatcagatccgtcaaacgaaataaacagagatttgtatgaaaataaacttgga
ggaaagtattaccagtatgctgttagtggagagaagggaatgaagaattcacgtgtttat
cgtgaagagtataaggaagaaataaccgagcacgttggagctgagtattttttaaagaat
tttgtacgaaaagatcgagttgatattctttggatagatattgaaggaaatgagttttca
ttccttgaacaaattcataacggcggaacaattgataaagaaggaatcaaaatctgtcag
attaacgtagagttgcacaaagaccttttggagaaaccggaaggagaaatggaaaaattc
cacgactttatcttcaaaattctagaagatggaaaatacatttcaataaacccatacttt
gtcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGAGGTTAAATACATCGCGCTTC 435 287 343 Antisense
ACATCGCGCTTCCCAATAAGAAGGA 299 107 356 Antisense
GGTTACTTTGGGAATCGGTCATGAT 286 505 393 Antisense
GGATCAGATCCGTCAAACGAAATAA 156 511 469 Antisense
TAACCGAGCACGTTGGAGCTGAGTA 358 637 605 Antisense
GCACGTTGGAGCTGAGTATTTTTTA 544 313 612 Antisense
AATGAGTTTTCATTCCTTGAACAAA 359 165 691 Antisense
GAACAAATTCATAACGGCGGAACAA 647 351 709 Antisense
AACGTAGAGTTGCACAAAGACCTTT 239 143 766 Antisense
CCACGACTTTATCTTCAAAATTCTA 186 275 822 Antisense
TTCAATAAACCCATACTTTGTCGAG 518 683 864 Antisense
Sequence Source Affymetrix Proprietary Database