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[184828_s_at]

Description F09B12.1A /REP_DB=WormBase Gene ID /WP=CE23633 /TR=Q9U3K3 /GB=CAB54204.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 63      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1395
1 2 3 4 range
A 35.2
(-3)
A 		1157.7
(2.2)
P 		1335.6
(3)
P 		70.9
(-2.8)
A 		1300
B 8.2
(-3)
A 		1165.9
(2.2)
P 		1340.8
(3)
P 		75.9
(-2.7)
A 		1333
C 5.6
(-3)
A 		1227.5
(2.3)
P 		1400.2
(3)
P 		22
(-2.9)
A 		1395
avr 16.3
(-3) 		1183.7
(2.2) 		1358.9
(3) 		56.3
(-2.8) 		1343

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 886
1 2 3 4 5 6 range
A 164.3
(-3)
P 		792.2
(1.6)
P 		329.3
(-1.8)
P 		976.7
(3)
P 		841.2
(2)
P 		379.5
(-1.4)
P 		812
B 266
(-3)
P 		755.7
(1.3)
P 		626.9
(0.2)
P 		950
(3)
P 		775.3
(1.5)
P 		320.7
(-2.5)
P 		684
C 271.1
(-2.7)
P 		810.4
(1.2)
P 		821.7
(1.3)
P 		912.8
(2)
P 		1050.7
(3)
P 		227
(-3)
P 		824
avr 233.8
(-3) 		786.1
(1.6) 		592.6
(0) 		946.5
(3) 		889.1
(2.5) 		309.1
(-2.4) 		713
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 486
1 2 3 4 range
A 12.8
(-3)
A 		251.3
(1.3)
P 		349.2
(3)
P 		10.4
(-3)
A 		339
B 2.6
(-3)
A 		288
(2.6)
P 		310.7
(3)
P 		16.2
(-2.7)
A 		308
C 1.9
(-3)
A 		352.9
(1.3)
P 		488
(3)
P 		3.7
(-3)
A 		486
avr 5.8
(-3) 		297.4
(1.6) 		382.6
(3) 		10.1
(-2.9) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 30.3
(-3)
P 		281.7
(3)
P 		71.7
(-2)
P 		247.7
(2.2)
P 		253.8
(2.3)
P 		92.4
(-1.5)
P 		251
B 92.6
(-3)
P 		251.5
(1.3)
P 		152.2
(-1.4)
P 		251.6
(1.3)
P 		315
(3)
P 		119.6
(-2.3)
P 		222
C 100.5
(-2.4)
P 		247.3
(0.9)
P 		209.1
(0)
P 		183.6
(-0.6)
P 		340
(3)
P 		76
(-3)
P 		264
avr 74.5
(-3) 		260.2
(1.9) 		144.3
(-1.2) 		227.6
(1) 		302.9
(3) 		96
(-2.4) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184828_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17426
Sequence Type Exemplar sequence
Representative Public ID F09B12.1A NCBI
Target Description F09B12.1A /REP_DB=WormBase Gene ID /WP=CE23633 /TR=Q9U3K3 /GB=CAB54204.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078111(11), NM_078110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078111 NCBI Caenorhabditis elegans F09B12.1b (F09B12.1) mRNA, complete cds. 11/11 None
NM_078110 NCBI Caenorhabditis elegans F09B12.1a (F09B12.1) mRNA, complete cds. 11/11 None
SNAP00000031085 ENSEMBL cdna:SNAP chromosome:CEL140:X:15102016:15106345:-1 11/11 None
GENEFINDER00000031091 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15102016:15106345:-1 11/11 None
F09B12.1b.2 ENSEMBL cdna:known chromosome:CEL140:X:15101703:15107685:-1 gene:F09B12.1 11/11 None
F09B12.1b.1 ENSEMBL cdna:known chromosome:CEL140:X:15101703:15107883:-1 gene:F09B12.1 11/11 None
F09B12.1a ENSEMBL cdna:known chromosome:CEL140:X:15102016:15107657:-1 gene:F09B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15102015-15107657(-) 100.0 100.0
Public Domain and Genome References
Ensembl F09B12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54203 Hypothetical protein F09B12.1b [Caenorhabditis elegans] ref|NP_510512.1| F09B12.1b [Caenorhabditis elegans] 0.0
blast CAB54204 Hypothetical protein F09B12.1a [Caenorhabditis elegans] ref|NP_510511.1| F09B12.1a [Caenorhabditis elegans] 0.0
blast F89719 protein F09B12.1 [imported] - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:184828_S_AT
gctgctgttggtacttctcataccgaagagacagtcttcgctagtgtgaaaaccgcaaaa
ctaccatctggacatgtcgtggccaagggagccaagactgctgagttctctgaagttgtg
tgtaatgctaccaaatgcgactttgagaatgaaaacacatgcggctacaaagatgctcac
accactcaatcgattcgtggtcttaccacgaagttcaacgtggtgacggggcaattcatg
aacagagtcaccggaatcaaggagagtaccgaaggagagtactatgccgccacattcctc
ttcccaagagagatggccggacttgaagcatcggtggctccgttcactgagcaatcgaga
atccgattccattattacgagggaactcacggagttcagctcaagggatgttgcaccaat
attgagaactgtccgttcagctctgacaagtttgtgacggtggccgaccgtgcttggaag
acggcttctttcaagtgtccaaagggaactgataaggttattttcatctgtgaaaacaca
agaaccaaccaaggagcctgtgccgtcgacggaatcggactcgtgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTGTTGGTACTTCTCATACCG 594 297 1108 Antisense
CTACCATCTGGACATGTCGTGGCCA 641 223 1168 Antisense
GAGCCAAGACTGCTGAGTTCTCTGA 658 383 1196 Antisense
TGCGGCTACAAAGATGCTCACACCA 361 583 1267 Antisense
CCGAAGGAGAGTACTATGCCGCCAC 639 261 1376 Antisense
GTGGCTCCGTTCACTGAGCAATCGA 654 491 1441 Antisense
AACTGTCCGTTCAGCTCTGACAAGT 403 141 1534 Antisense
GACAAGTTTGTGACGGTGGCCGACC 3 365 1552 Antisense
GAAGACGGCTTCTTTCAAGTGTCCA 444 339 1584 Antisense
AGAACCAACCAAGGAGCCTGTGCCG 83 75 1648 Antisense
CCGTCGACGGAATCGGACTCGTGGA 246 1 1670 Antisense
Sequence Source Affymetrix Proprietary Database