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[184827_at]

Description C18B10.5 /REP_DB=WormBase Gene ID /WP=CE08299 /TR=P91073 /GB=AAK18890.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 28      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 3.9
(-2.1)
A 		11.9
(2.2)
A 		2.2
(-3)
A 		13.3
(3)
A 		11
B 27.9
(3)
A 		6.9
(-2)
A 		2.9
(-3)
A 		4.7
(-2.6)
A 		25
C 3.4
(-2.3)
A 		17.3
(1.4)
A 		0.9
(-3)
A 		23.2
(3)
A 		22
avr 11.7
(2) 		12
(2.1) 		2
(-3) 		13.7
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.2
(-3)
A 		21
(3)
A 		3.6
(-2.3)
A 		1.4
(-2.9)
A 		10.3
(-0.2)
A 		5.2
(-1.8)
A 		20
B 1
(-3)
A 		3.4
(-2.5)
A 		30
(3)
A 		6.9
(-1.8)
A 		3
(-2.6)
A 		2.8
(-2.6)
A 		29
C 1
(-3)
A 		5.1
(-1.8)
A 		21.2
(3)
A 		1.9
(-2.7)
A 		1.3
(-2.9)
A 		6.4
(-1.4)
A 		20
avr 1.1
(-3) 		9.8
(0) 		18.3
(3) 		3.4
(-2.2) 		4.9
(-1.7) 		4.8
(-1.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-0.6)
A 		2.6
(3)
A 		0.6
(-3)
A 		2
(1.2)
A 		2
B 8.9
(3)
A 		1.7
(-2.3)
A 		0.7
(-3)
A 		1
(-2.8)
A 		8
C 1.1
(-2)
A 		5
(3)
A 		0.3
(-3)
A 		3.9
(1.6)
A 		5
avr 3.8
(3) 		3.1
(1.7) 		0.5
(-3) 		2.3
(0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.2
(-3)
A 		7.5
(3)
A 		0.8
(-2.5)
A 		0.4
(-2.8)
A 		3.1
(-0.6)
A 		1.3
(-2.1)
A 		7
B 0.3
(-3)
A 		1.1
(-2.3)
A 		7.3
(3)
A 		1.8
(-1.7)
A 		1.2
(-2.2)
A 		1
(-2.4)
A 		7
C 0.4
(-3)
A 		1.6
(-1.6)
A 		5.4
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		2.1
(-1)
A 		5
avr 0.3
(-3) 		3.4
(1.4) 		4.5
(3) 		0.9
(-2.1) 		1.6
(-1.1) 		1.5
(-1.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12302
Sequence Type Exemplar sequence
Representative Public ID C18B10.5 NCBI
Target Description C18B10.5 /REP_DB=WormBase Gene ID /WP=CE08299 /TR=P91073 /GB=AAK18890.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072524(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072524 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-8) (srbc-8) mRNA, complete cds. 9/11 None
C18B10.5 ENSEMBL cdna:known chromosome:CEL140:V:7485924:7487692:-1 gene:C18B10.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031952 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7485922-7486405(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-8
Ensembl C18B10.5
Entrez Gene 182772 Entrez gene
SwissProt Q5DX30 EMBL-EBI
WormBase CE38037 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAW88410 Serpentine receptor, class bc (class b-like) protein 8 [Caenorhabditis elegans] ref|NP_504925.2| Serpentine Receptor, class BC (class B-like) family member (srbc-8) [Caenorhabditis elegans] 1.0E-162
blast AAF99938 Serpentine receptor, class bc (class b-like) protein 1 [Caenorhabditis elegans] ref|NP_503913.1| Serpentine Receptor, class BC (class B-like) family member (srbc-1) [Caenorhabditis elegans] 1.0E-132
blast AAC27086 Serpentine receptor, class bc (class b-like) protein 2 [Caenorhabditis elegans] ref|NP_503940.2| Serpentine Receptor, class BC (class B-like) family member (srbc-2) [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 9.3E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504925.2 7 15-36,48-70,85-107,128-150,185-204,217-239,254-273
C18B10.5 7 15-36,48-70,85-107,128-150,185-204,217-239,254-273
Sequence
Target Sequence 
>C. ELEGANS:184827_AT
atgcttcaggtgctatttgcgttaaattttgcattttctggtttactttctacaaggctg
ctacttttcaaaaaatcacacagacggaatgcaggagaggagcagtcaaagataaatcat
attgctctgatcgacgctgccaacgtattcctatgcgattttctaccaacgttctccaat
tatgttaatcaatacccatttttcagtttcaaggtcggagtttttcctgctcttgatttt
gaaaaggaaaagcgcccggacgagtgttgtggttacgacgactcgtacattgcaaaactc
aacgcatctgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTTCAGGTGCTATTTGCGTTAA 107 43 13 Antisense
ACTTTCTACAAGGCTGCTACTTTTC 538 101 57 Antisense
AAATCACACAGACGGAATGCAGGAG 491 117 85 Antisense
GCCAACGTATTCCTATGCGATTTTC 476 277 151 Antisense
TATGCGATTTTCTACCAACGTTCTC 531 655 164 Antisense
TAATCAATACCCATTTTTCAGTTTC 89 635 198 Antisense
GAGTTTTTCCTGCTCTTGATTTTGA 303 397 230 Antisense
GGAAAAGCGCCCGGACGAGTGTTGT 168 529 258 Antisense
GGACGAGTGTTGTGGTTACGACGAC 177 523 270 Antisense
ACGACGACTCGTACATTGCAAAACT 270 93 287 Antisense
ATTGCAAAACTCAACGCATCTGTGA 501 5 301 Antisense
Sequence Source Affymetrix Proprietary Database