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[184826_s_at]

Description T23B12.9 /REP_DB=WormBase Gene ID /WP=CE14042 /TR=O17008 /GB=AAB69941.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 31.3
(-3)
A 		94.8
(1.2)
A 		61.6
(-1)
A 		122.4
(3)
A 		91
B 39
(0.6)
A 		63.3
(2.9)
A 		64.8
(3)
A 		1.5
(-3)
A 		63
C 34.4
(-0.8)
A 		65.7
(3)
A 		44.8
(0.5)
A 		16.1
(-3)
A 		50
avr 34.9
(-3) 		74.6
(3) 		57.1
(0.4) 		46.7
(-1.2) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 55.2
(0.6)
A 		86.6
(3)
P 		31
(-1.2)
A 		7.9
(-3)
A 		40
(-0.6)
A 		13.2
(-2.6)
A 		79
B 8.6
(-2.7)
A 		18.7
(-1.6)
A 		46.1
(1.2)
A 		64.1
(3)
A 		12.8
(-2.2)
A 		5.2
(-3)
A 		59
C 35.8
(0.3)
A 		26.2
(-0.9)
A 		57.6
(3)
A 		9.6
(-3)
A 		42.4
(1.1)
A 		9.5
(-3)
A 		48
avr 33.2
(1) 		43.8
(2.8) 		44.9
(3) 		27.2
(0) 		31.7
(0.8) 		9.3
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 11.4
(-3)
A 		20.6
(3)
A 		16.1
(0.1)
A 		17.9
(1.2)
A 		9
B 12.4
(1.7)
A 		15.6
(3)
A 		15
(2.8)
A 		0.3
(-3)
A 		15
C 11.4
(0.2)
A 		18.9
(3)
A 		15.6
(1.8)
A 		2.7
(-3)
A 		16
avr 11.7
(-0.5) 		18.4
(3) 		15.6
(1.5) 		7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 10.2
(-1.3)
A 		30.8
(3)
P 		6.7
(-2)
A 		2
(-3)
A 		12.1
(-0.9)
A 		3.2
(-2.8)
A 		29
B 3
(-2.6)
A 		6.2
(-1.3)
A 		11.2
(0.7)
A 		17
(3)
A 		5.2
(-1.7)
A 		1.9
(-3)
A 		15
C 13.3
(2.3)
A 		8
(-0.1)
A 		14.7
(3)
A 		1.9
(-3)
A 		13.7
(2.5)
A 		3.2
(-2.4)
A 		13
avr 8.8
(-0) 		15
(3) 		10.9
(1) 		7
(-0.9) 		10.3
(0.7) 		2.8
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184826_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12480
Sequence Type Exemplar sequence
Representative Public ID T23B12.9 NCBI
Target Description T23B12.9 /REP_DB=WormBase Gene ID /WP=CE14042 /TR=O17008 /GB=AAB69941.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072783(11), NM_072785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072783 NCBI Caenorhabditis elegans T23B12.9 (T23B12.9) mRNA, complete cds. 11/11 A 
NM_072785 NCBI Caenorhabditis elegans T24H5.1 (T24H5.1) mRNA, complete cds. 11/11 A 
SNAP00000022128 ENSEMBL cdna:SNAP chromosome:CEL140:V:8489917:8490936:1 11/11 None
GENEFINDER00000022136 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8489917:8490936:1 11/11 None
SNAP00000042006 ENSEMBL cdna:SNAP chromosome:CEL140:V:8478211:8479839:-1 11/11 None
GENEFINDER00000042014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8478211:8480383:-1 11/11 None
T23B12.9 ENSEMBL cdna:known chromosome:CEL140:V:8478211:8484485:-1 gene:T23B12.9 11/11 A 
T24H5.1 ENSEMBL cdna:known chromosome:CEL140:V:8489692:8490936:1 gene:T24H5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title

Ensembl T23B12.9
T24H5.1
Entrez Gene 188779 Entrez gene
188868 Entrez gene
SwissProt O17008 EMBL-EBI
Q966F1 EMBL-EBI
WormBase CE14042 Wormbase
CE26008 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69941 Hypothetical protein T23B12.9 [Caenorhabditis elegans] ref|NP_505184.1| T23B12.9 [Caenorhabditis elegans] 0.0
blast AAA85753 Hypothetical protein F07C7.1 [Caenorhabditis elegans] ref|NP_509552.1| F07C7.1 [Caenorhabditis elegans] 0.0
blast AAK84578 Hypothetical protein T24H5.1 [Caenorhabditis elegans] ref|NP_505186.1| T24H5.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-27
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 8.9E-76
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.6E-12
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-27
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.6E-27
Sequence
Target Sequence 
>C. ELEGANS:184826_S_AT
gagccgccagaacattcgacatggtacaggacctgacaacgacactcccgccaacgacac
caacaacgacacggacaaggacaccgctggcagcgaccagtgcagatcctgccccacact
gcccacaccagcactcttagatttcgaaaactcacaccttgcgcaagaggcgttcccagc
ccaaattctcccgaacatcggtgaagaacctagagatatcactctggataggtggaaatc
acacgacgctattgggcctgagatagatatttttgaaggacccgactacgacactaacaa
cccgctcttccccgaagatggggaggatgaagacagaccagttgaatacgtggaccccaa
cacggcgatccccgagatagcctacgaccacgcagagactagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCGCCAGAACATTCGACATGGT 92 387 4680 Antisense
AGAACATTCGACATGGTACAGGACC 662 71 4688 Antisense
CGAAAACTCACACCTTGCGCAAGAG 21 253 4824 Antisense
TCACACCTTGCGCAAGAGGCGTTCC 172 627 4831 Antisense
GGAAATCACACGACGCTATTGGGCC 446 527 4913 Antisense
CACACGACGCTATTGGGCCTGAGAT 589 193 4919 Antisense
GATAGATATTTTTGAAGGACCCGAC 550 405 4941 Antisense
TTGAAGGACCCGACTACGACACTAA 41 701 4952 Antisense
CCCGCTCTTCCCCGAAGATGGGGAG 78 261 4980 Antisense
TTGAATACGTGGACCCCAACACGGC 172 655 5021 Antisense
CCTACGACCACGCAGAGACTAGACT 328 269 5060 Antisense
Sequence Source Affymetrix Proprietary Database