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[184825_at]

Description E03H12.6 /REP_DB=WormBase Gene ID /WP=CE09145 /TR=O02125 /GB=AAC47981.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 04      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 21.7
(3)
A 		4
(-2.7)
A 		3
(-3)
A 		8.2
(-1.3)
A 		19
B 7
(-2.5)
A 		15
(-0.9)
A 		4.3
(-3)
A 		34.5
(3)
A 		30
C 20.7
(-1.8)
A 		2.4
(-3)
A 		20.6
(-1.8)
A 		94.7
(3)
A 		92
avr 16.5
(-1.5) 		7.1
(-3) 		9.3
(-2.7) 		45.8
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 9.6
(-2)
A 		17.2
(-0.6)
A 		36.6
(3)
A 		16.4
(-0.8)
A 		10.9
(-1.8)
A 		4.5
(-3)
A 		32
B 34.1
(1.5)
A 		32.7
(1.3)
A 		40
(2.3)
A 		44.9
(3)
A 		16.2
(-1)
A 		2.3
(-3)
A 		43
C 25.7
(-0.1)
A 		36.4
(1.2)
A 		38.8
(1.5)
A 		50.1
(3)
A 		4
(-2.9)
A 		3.6
(-3)
A 		47
avr 23.1
(0.4) 		28.8
(1.3) 		38.5
(3) 		37.1
(2.8) 		10.4
(-1.8) 		3.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7.9
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		1.2
(-2.7)
A 		7
B 2.2
(-1.9)
A 		3.7
(-0.4)
A 		1
(-3)
A 		7.3
(3)
A 		6
C 6.9
(-0.6)
A 		0.7
(-3)
A 		7.2
(-0.5)
A 		16
(3)
A 		15
avr 5.7
(0.7) 		1.8
(-3) 		3
(-1.9) 		8.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.8
(-2.4)
A 		6.1
(1.3)
A 		8
(3)
A 		4.2
(-0.3)
A 		3.3
(-1.1)
A 		1.1
(-3)
A 		7
B 11.9
(3)
A 		10.9
(2.5)
A 		9.7
(1.8)
A 		11.9
(3)
A 		6.6
(0.1)
A 		0.9
(-3)
A 		11
C 9.5
(2)
A 		11.1
(3)
A 		9.9
(2.3)
A 		10.1
(2.4)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		10
avr 7.7
(1.8) 		9.4
(3) 		9.2
(2.9) 		8.7
(2.5) 		3.7
(-1.1) 		1.1
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10650
Sequence Type Exemplar sequence
Representative Public ID E03H12.6 NCBI
Target Description E03H12.6 /REP_DB=WormBase Gene ID /WP=CE09145 /TR=O02125 /GB=AAC47981.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027936(11), NM_001027937(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027936 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-24) (srz-24) mRNA, complete cds. 11/11 None
NM_001027937 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-24) (srz-24) mRNA, complete cds. 10/11 None
GENEFINDER00000020618 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4979802:4981117:-1 11/11 None
E03H12.6b ENSEMBL cdna:known chromosome:CEL140:IV:4979802:4981117:-1 gene:E03H12.6 10/11 None
E03H12.6a ENSEMBL cdna:known chromosome:CEL140:IV:4979802:4981117:-1 gene:E03H12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4979807-4981123(-) 100.0 100.0
Public Domain and Genome References
Ensembl E03H12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023108 Serpentine Receptor, class Z family member (srz-24) [Caenorhabditis elegans] gb|AAC47981.2| Serpentine receptor, class z protein 24, isoform b [Caenorhabditis elegans] 1.0E-169
blast NP_001023107 Serpentine Receptor, class Z family member (srz-24) [Caenorhabditis elegans] gb|AAW88403.1| Serpentine receptor, class z protein 24, isoform a [Caenorhabditis elegans] 1.0E-167
blast NP_001023107 Serpentine Receptor, class Z family member (srz-24) [Caenorhabditis elegans] gb|AAW88403.1| Serpentine receptor, class z protein 24, isoform a [Caenorhabditis elegans] 1.0E-165
blast NP_001023108 Serpentine Receptor, class Z family member (srz-24) [Caenorhabditis elegans] gb|AAC47981.2| Serpentine receptor, class z protein 24, isoform b [Caenorhabditis elegans] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 2.0E-78
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.5E-92
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023107.1 7 34-56,85-107,117-139,164-185,200-222,243-265,275-297
NP_001023108.1 7 34-56,85-107,117-139,160-176,186-208,228-250,255-277
E03H12.6b 7 34-56,85-107,117-139,160-176,186-208,228-250,255-277
E03H12.6a 7 34-56,85-107,117-139,164-185,200-222,243-265,275-297
GENEFINDER00000020618 7 34-56,85-107,117-139,164-185,200-222,243-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:184825_AT
tttcatttttacccgtctcatattgaaagtgttctgaaagtgcaaaaatatatacttaag
tttatctggattttttatttactgtttgtaattaaagagtcaactggtataattttatat
gtattaaaattcagcaaaatgattaccactaaagaaaaccacagcgtcattctggatttg
atcacattcatagtattaaacagtcttcttgtcattacttcattgctctacatcccaata
ataatcagttctaaattcaaaaattccggaccaaccgaaaagaataaatcacaacaatat
ttaatttggcagacagtgtttattttgatatttaaattgacgactattctaatgttaatc
ataatttttctctacgattctgaacaagcgtttgtattccacattataatggtcactgat
gtgatgagtacacctttgatagtacaaatatcatatctgtgcaataacaagcggaatatc
aggactttgtttaagaatttcaaatttgccaattttgtcagagtcgtgttaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCATTTTTACCCGTCTCATATTG 66 673 442 Antisense
AAACCACAGCGTCATTCTGGATTTG 434 125 597 Antisense
AACAGTCTTCTTGTCATTACTTCAT 294 137 640 Antisense
GTCATTACTTCATTGCTCTACATCC 655 467 652 Antisense
GCTCTACATCCCAATAATAATCAGT 364 299 666 Antisense
ATTGACGACTATTCTAATGTTAATC 476 5 777 Antisense
TCATAATTTTTCTCTACGATTCTGA 53 619 800 Antisense
AGCGTTTGTATTCCACATTATAATG 695 77 828 Antisense
GTCACTGATGTGATGAGTACACCTT 448 465 853 Antisense
AGCGGAATATCAGGACTTTGTTTAA 644 79 911 Antisense
CCAATTTTGTCAGAGTCGTGTTAAA 171 275 950 Antisense
Sequence Source Affymetrix Proprietary Database