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[184824_at]

Description Y116A8C.7 /REP_DB=WormBase Gene ID /WP=CE23318 /TR=Q9U2T5 /GB=CAB55142.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 28      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 42.9
(3)
A 		2.8
(-3)
A 		2.9
(-3)
A 		16.4
(-1)
A 		40
B 7.6
(-2)
A 		33.7
(3)
A 		2.3
(-3)
A 		8.3
(-1.9)
A 		31
C 10.5
(-2.5)
A 		45.3
(-0.3)
A 		2.2
(-3)
A 		97.6
(3)
A 		95
avr 20.3
(-0.2) 		27.3
(0.9) 		2.5
(-3) 		40.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 43.4
(0.5)
A 		69.1
(3)
A 		31.6
(-0.7)
A 		17.6
(-2)
A 		7.5
(-3)
A 		11.5
(-2.6)
A 		62
B 35.5
(2.9)
A 		11.9
(-2.8)
A 		16.4
(-1.7)
A 		15.9
(-1.8)
A 		10.9
(-3)
A 		35.9
(3)
A 		25
C 5.5
(-2.6)
A 		2.3
(-3)
A 		5
(-2.6)
A 		46.7
(3)
A 		10.8
(-1.9)
A 		10.1
(-1.9)
A 		44
avr 28.1
(3) 		27.8
(2.9) 		17.7
(-0.4) 		26.7
(2.5) 		9.7
(-3) 		19.2
(0.1) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 15.6
(3)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		2.4
(-2.3)
A 		15
B 2.4
(-1.5)
A 		8.3
(3)
A 		0.5
(-3)
A 		1.8
(-2)
A 		8
C 3.5
(-2)
A 		13
(1.7)
A 		0.8
(-3)
A 		16.5
(3)
A 		16
avr 7.2
(2.9) 		7.3
(3) 		0.7
(-3) 		6.9
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8
(-1.5)
A 		24.6
(3)
A 		6.9
(-1.8)
A 		4.5
(-2.4)
A 		2.3
(-3)
A 		2.8
(-2.9)
A 		22
B 12.3
(2.3)
A 		4
(-3)
A 		4
(-3)
A 		4.2
(-2.9)
A 		4.4
(-2.7)
A 		13.4
(3)
A 		9
C 2
(-2.1)
A 		0.7
(-3)
A 		1.3
(-2.6)
A 		9.4
(3)
A 		3.5
(-1.1)
A 		3.4
(-1.1)
A 		9
avr 7.4
(0.8) 		9.8
(3) 		4.1
(-2.3) 		6
(-0.6) 		3.4
(-3) 		6.5
(-0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9299
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.7 NCBI
Target Description Y116A8C.7 /REP_DB=WormBase Gene ID /WP=CE23318 /TR=Q9U2T5 /GB=CAB55142.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000004075 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16928529:16929026:1 9/11 None
GENEFINDER00000004168 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16928293:16929026:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Y116A8C.7 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16928298-16929032(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31508 hypothetical protein Y116A8C.7 - Caenorhabditis elegans 2.0E-83
blast T31508 hypothetical protein Y116A8C.7 - Caenorhabditis elegans 8.0E-62
Sequence
Target Sequence 
>C. ELEGANS:184824_AT
tcctcatctgcggtttgttcaatggatccagtacagtcaaaggaacatgttcctcttttc
agctcacagagtacagtatggaacttgagaacaaattgaagaaagagatgacttgtgaga
aatttaccgcttttgtggaactacttcgcaaacatctggaaaacgagccaaaggaggtgc
aagatctcgcagccattagtcttttcggagcaattgtggaatactaccttaaccctctgg
acactcacatcgctttcgtttctctaacttgcgaaggagttgaagtcaacatgccaaccc
ctgaaacttcattggacaaagccgccgatcaatctgacttcaagcacggccaaccaggat
ctgcttgtccatctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCATCTGCGGTTTGTTCAATGG 398 593 56 Antisense
AGGAACATGTTCCTCTTTTCAGCTC 440 55 96 Antisense
TACCGCTTTTGTGGAACTACTTCGC 420 649 180 Antisense
AGGTGCAAGATCTCGCAGCCATTAG 460 57 230 Antisense
GCAGCCATTAGTCTTTTCGGAGCAA 385 313 244 Antisense
ATCGCTTTCGTTTCTCTAACTTGCG 270 37 304 Antisense
GCCAACCCCTGAAACTTCATTGGAC 561 277 348 Antisense
TGGACAAAGCCGCCGATCAATCTGA 370 547 368 Antisense
GATCAATCTGACTTCAAGCACGGCC 89 423 382 Antisense
AAGCACGGCCAACCAGGATCTGCTT 445 151 397 Antisense
ACCAGGATCTGCTTGTCCATCTGGA 223 85 408 Antisense
Sequence Source Affymetrix Proprietary Database