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[184823_at]

Description C01B10.4 /REP_DB=WormBase Gene ID /WP=CE06735 /TR=Q17541 /GB=AAC47922.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 138.6
(3)
A 		125.7
(0.6)
A 		105.7
(-3)
A 		125.1
(0.5)
A 		33
B 162.2
(2)
A 		112.4
(-0.4)
A 		58.5
(-3)
A 		183.8
(3)
P 		125
C 184.8
(2.7)
A 		115.2
(-3)
A 		127.4
(-2)
A 		187.9
(3)
P 		73
avr 161.9
(2.7) 		117.8
(-1.2) 		97.2
(-3) 		165.6
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 135
(-0.3)
A 		80.5
(-3)
A 		199.8
(3)
P 		190.7
(2.5)
P 		190.3
(2.5)
P 		167.7
(1.4)
P 		119
B 76.9
(-3)
A 		106.8
(-1.7)
A 		170.9
(0.9)
P 		172
(1)
P 		203.7
(2.3)
P 		219.8
(3)
P 		143
C 101.7
(-3)
A 		105.3
(-2.8)
A 		137.5
(-1.4)
A 		228.3
(2.8)
P 		183.9
(0.8)
M 		232.2
(3)
P 		131
avr 104.5
(-2.6) 		97.5
(-3) 		169.4
(1) 		197
(2.5) 		192.6
(2.2) 		206.6
(3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 50.4
(3)
A 		27.3
(-1.3)
A 		27.6
(-1.3)
A 		18.3
(-3)
A 		32
B 51.7
(3)
A 		27.8
(-0.8)
A 		13.6
(-3)
A 		39.2
(1)
P 		38
C 61.2
(3)
A 		33.1
(-2.7)
A 		44.4
(-0.4)
A 		31.7
(-3)
P 		30
avr 54.4
(3) 		29.4
(-2.8) 		28.5
(-3) 		29.7
(-2.7) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 24.9
(-3)
A 		28.6
(-2.3)
A 		43.5
(0.4)
P 		48.4
(1.3)
P 		57.4
(3)
P 		40.8
(-0.1)
P 		33
B 26.8
(-3)
A 		35.5
(-2.1)
A 		41.5
(-1.4)
P 		45.5
(-1)
P 		82.8
(3)
P 		82
(2.9)
P 		56
C 37.7
(-2.3)
A 		32.1
(-3)
A 		35
(-2.6)
A 		45.9
(-1.2)
P 		59.5
(0.6)
M 		77.7
(3)
P 		46
avr 29.8
(-3) 		32.1
(-2.6) 		40
(-1.3) 		46.6
(-0.3) 		66.6
(3) 		66.8
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11066
Sequence Type Exemplar sequence
Representative Public ID C01B10.4 NCBI
Target Description C01B10.4 /REP_DB=WormBase Gene ID /WP=CE06735 /TR=Q17541 /GB=AAC47922.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068621 NCBI Caenorhabditis elegans C01B10.4 (C01B10.4) mRNA, complete cds. 11/11 None
SNAP00000026859 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6628362:6631723:-1 11/11 None
GENEFINDER00000026869 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6628362:6632050:-1 11/11 None
C01B10.4 ENSEMBL cdna:known chromosome:CEL140:IV:6628362:6631729:-1 gene:C01B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6628367-6631729(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B10.4
Entrez Gene 177429 Entrez gene
SwissProt Q17541 EMBL-EBI
WormBase CE34641 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6979 response to oxidative stress inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4601 peroxidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47922 Hypothetical protein C01B10.4 [Caenorhabditis elegans] ref|NP_501022.3| C01B10.4 [Caenorhabditis elegans] 0.0
blast AAC47921 Hypothetical protein C01B10.10 [Caenorhabditis elegans] ref|NP_501021.2| C01B10.10 [Caenorhabditis elegans] 0.0
blast AAC02583 Hypothetical protein C17H12.4 [Caenorhabditis elegans] ref|NP_501043.1| C17H12.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 3.8E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.2E-38
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.2E-58
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 8.0E-45
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 2.2E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501022.3 1 538-560
C01B10.4 1 538-560
SNAP00000026859 1 496-518
GENEFINDER00000026869 1 536-558
Sequence
Target Sequence 
>C. ELEGANS:184823_AT
aataatgtcacggcatacctctacgaatacacttatccgaaacatggtagacataccgat
gatctctcttatataatgggagttcatgcatttgaaaaagacgaaaatgaggtgcatttg
gagcaagtttataaggatatggttattaattttataaagcttggagaacctggaatgggt
ttcgaaaagtctgaacagaatgagtccacttattttgatatttattggaacgagacgaca
ggagaaaggccacgaatgagaaaatatttcgaaaaggaggtcactgactattggctcaag
gaaatgattgaatttgatcagaaagtgactgaaacaaagaagaaattaaaacaaatatct
cttaaaactgtgccattcatagaaaagccactggagcaaaatgatgaagcaggaacatta
attggtgtttcattaatagccatttccatattccttattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAATGTCACGGCATACCTCTACG 666 171 1120 Antisense
ACCTCTACGAATACACTTATCCGAA 61 89 1136 Antisense
GGTAGACATACCGATGATCTCTCTT 275 505 1165 Antisense
ACCGATGATCTCTCTTATATAATGG 581 87 1174 Antisense
GTCTGAACAGAATGAGTCCACTTAT 326 471 1308 Antisense
GAGACGACAGGAGAAAGGCCACGAA 630 383 1351 Antisense
GGAGGTCACTGACTATTGGCTCAAG 243 517 1395 Antisense
ATATCTCTTAAAACTGTGCCATTCA 248 21 1474 Antisense
GTGCCATTCATAGAAAAGCCACTGG 181 479 1489 Antisense
GGTGTTTCATTAATAGCCATTTCCA 143 501 1543 Antisense
ATAGCCATTTCCATATTCCTTATTG 611 21 1555 Antisense
Sequence Source Affymetrix Proprietary Database