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[184822_at]

Description Y40C7B.4 /REP_DB=WormBase Gene ID /WP=CE24263 /TR=Q9N509 /GB=AAF60544.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4.6
(-3)
A 		5.9
(-2.3)
A 		16
(3)
A 		12.2
(1)
A 		11
B 7.2
(-3)
A 		12.2
(-1.6)
A 		29.3
(3)
A 		23.8
(1.5)
A 		22
C 5.3
(-2.3)
A 		5.8
(-0.7)
A 		5.1
(-3)
A 		6.9
(3)
A 		2
avr 5.7
(-3) 		8
(-1.8) 		16.8
(3) 		14.3
(1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 5.8
(-2.7)
A 		4.5
(-2.8)
A 		30.5
(0.4)
A 		52
(3)
A 		23.5
(-0.5)
A 		3.1
(-3)
A 		49
B 19.1
(1.7)
A 		12.7
(-0.2)
A 		5.5
(-2.4)
A 		5.4
(-2.4)
A 		23.5
(3)
A 		3.4
(-3)
A 		20
C 6.5
(-2.1)
A 		31.5
(3)
A 		3.6
(-2.7)
A 		5.1
(-2.4)
A 		5.5
(-2.3)
A 		2.1
(-3)
A 		29
avr 10.5
(-0.5) 		16.2
(1.5) 		13.2
(0.5) 		20.8
(3) 		17.5
(1.9) 		2.9
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.7
(-2.2)
A 		1.3
(-3)
A 		4.2
(3)
A 		1.8
(-2)
A 		3
B 2.3
(-3)
A 		3
(-2.1)
A 		6.8
(3)
A 		5.1
(0.7)
A 		5
C 1.8
(3)
A 		1.7
(2)
A 		1.8
(3)
A 		1.2
(-3)
A 		1
avr 1.9
(-3) 		2
(-2.8) 		4.3
(3) 		2.7
(-1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		1.6
(-2.6)
A 		6.7
(-0.1)
A 		13.2
(3)
A 		7.1
(0.1)
A 		0.7
(-3)
A 		13
B 6.6
(0.8)
A 		4.2
(-0.9)
A 		1.3
(-3)
A 		1.4
(-2.9)
A 		9.6
(3)
A 		1.3
(-3)
A 		8
C 2.4
(-1.9)
A 		9.6
(3)
A 		0.9
(-2.9)
A 		1
(-2.8)
A 		1.8
(-2.3)
A 		0.7
(-3)
A 		9
avr 3.4
(-0.2) 		5.1
(1.8) 		3
(-0.6) 		5.2
(1.9) 		6.2
(3) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17411
Sequence Type Exemplar sequence
Representative Public ID Y40C7B.4 NCBI
Target Description Y40C7B.4 /REP_DB=WormBase Gene ID /WP=CE24263 /TR=Q9N509 /GB=AAF60544.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078397(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078397 NCBI Caenorhabditis elegans Y40C7B.4 (Y40C7B.4) mRNA, complete cds. 11/11 None
SNAP00000000902 ENSEMBL cdna:SNAP chromosome:CEL140:X:17256146:17256691:-1 11/11 None
GENEFINDER00000000905 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17256146:17256691:-1 11/11 None
Y40C7B.4 ENSEMBL cdna:known chromosome:CEL140:X:17256146:17256691:-1 gene:Y40C7B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17256145-17256691(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y40C7B.4
Entrez Gene 189796 Entrez gene
SwissProt Q9N509 EMBL-EBI
WormBase CE24263 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_510798 Y40C7B.4 [Caenorhabditis elegans] gb|AAF60544.1| Hypothetical protein Y40C7B.4 [Caenorhabditis elegans] 3.0E-86
blast CAB54346 Hypothetical protein Y26D4A.10 [Caenorhabditis elegans] ref|NP_493292.1| Y26D4A.10 [Caenorhabditis elegans] 2.0E-32
blast CAE59519 Hypothetical protein CBG02912 [Caenorhabditis briggsae] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:184822_AT
tggagttgaaatacgagtaccccctccacgtggctgatcccgaaaaccttacaatacgtc
agcaggtggaagtcaataaacgacaaaatgaggcggatcgtattaagaaaatgatatcta
agagggatgcacttatagaaaaactcagggttctggatgaagacatcaaaaacgaggtcg
cacgaatgaatgctcgtcgtgaggcctatgataatgaaattgcaataaaaatgagacgcg
aaggtgccaaccttaatataagaaagcgaaaattaattgaaaatgacaatcgcttggaca
atgaagccgacgtcattggcaaaaagtctcgagcgttggaaaagcaaaatgtcattgtcc
aaccctccgcaatcgcaactcctcaacctgctgtcactccggagtttactactccaacat
ctgatgatccatcagctgaatttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTTGAAATACGAGTACCCCCT 682 545 23 Antisense
GCTGATCCCGAAAACCTTACAATAC 626 287 55 Antisense
AATACGTCAGCAGGTGGAAGTCAAT 113 173 75 Antisense
GCTCGTCGTGAGGCCTATGATAATG 249 299 214 Antisense
AAATGAGACGCGAAGGTGCCAACCT 415 119 251 Antisense
ATGAAGCCGACGTCATTGGCAAAAA 141 45 323 Antisense
TTGGCAAAAAGTCTCGAGCGTTGGA 284 607 338 Antisense
AGCAAAATGTCATTGTCCAACCCTC 681 73 365 Antisense
GCTGTCACTCCGGAGTTTACTACTC 598 293 412 Antisense
TTTACTACTCCAACATCTGATGATC 386 673 427 Antisense
TGATGATCCATCAGCTGAATTTGAA 330 567 444 Antisense
Sequence Source Affymetrix Proprietary Database