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[184821_s_at]

Description E03H12.7 /REP_DB=WormBase Gene ID /WP=CE09146 /TR=O02129 /GB=AAC47982.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 5.5
(-3)
A 		70.3
(1)
A 		14
(-2.5)
A 		102.2
(3)
A 		97
B 6.5
(-3)
A 		11.5
(-2.5)
A 		14.2
(-2.3)
A 		71.1
(3)
A 		65
C 19.6
(-1.8)
A 		16.6
(-2.1)
A 		7.6
(-3)
A 		68.8
(3)
A 		61
avr 10.5
(-3) 		32.8
(-1.1) 		11.9
(-2.9) 		80.7
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 9.7
(-2.8)
A 		11.4
(-2.7)
A 		5.3
(-3)
A 		9.9
(-2.8)
A 		102
(1.6)
P 		130.1
(3)
P 		125
B 10.1
(-3)
A 		29.4
(-1.9)
A 		9.4
(-3)
A 		23.1
(-2.2)
A 		89.5
(1.5)
A 		116.3
(3)
P 		107
C 54.3
(-0.5)
A 		10
(-3)
A 		52.1
(-0.6)
A 		44.1
(-1.1)
A 		109.8
(2.6)
A 		117.2
(3)
P 		107
avr 24.7
(-2.6) 		16.9
(-3) 		22.3
(-2.7) 		25.7
(-2.5) 		100.4
(1.8) 		121.2
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2
(-3)
A 		15.3
(3)
A 		3.7
(-2.2)
A 		15
(2.9)
A 		13
B 2.1
(-3)
A 		2.8
(-2.7)
A 		3.3
(-2.4)
A 		15.1
(3)
A 		13
C 6.5
(-0.4)
A 		4.8
(-1.6)
A 		2.7
(-3)
A 		11.6
(3)
A 		9
avr 3.5
(-2.8) 		7.6
(-0.5) 		3.2
(-3) 		13.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		4.1
(-2.4)
A 		1.2
(-3)
A 		2.5
(-2.7)
A 		30.8
(2.8)
P 		31.7
(3)
P 		31
B 3.5
(-2.8)
A 		9.8
(-1.9)
A 		2.3
(-3)
A 		6.1
(-2.4)
A 		36.4
(2)
A 		43.4
(3)
P 		41
C 20.1
(-0.2)
A 		3
(-3)
A 		13.3
(-1.3)
A 		8.9
(-2)
A 		35.5
(2.4)
A 		39.2
(3)
P 		36
avr 8.5
(-2.5) 		5.6
(-3) 		5.6
(-3) 		5.8
(-3) 		34.2
(2.3) 		38.1
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184821_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11063
Sequence Type Exemplar sequence
Representative Public ID E03H12.7 NCBI
Target Description E03H12.7 /REP_DB=WormBase Gene ID /WP=CE09146 /TR=O02129 /GB=AAC47982.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068293 NCBI Caenorhabditis elegans E03H12.7 (E03H12.7) mRNA, complete cds. 11/11 None
SNAP00000020612 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4987747:4988535:-1 11/11 None
GENEFINDER00000020621 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4987838:4988535:-1 10/11 None
E03H12.7 ENSEMBL cdna:known chromosome:CEL140:IV:4987747:4988587:-1 gene:E03H12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4987752-4988541(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03H12.7
Entrez Gene 177263 Entrez gene
SwissProt O02129 EMBL-EBI
WormBase CE09146 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500694 E03H12.7 [Caenorhabditis elegans] gb|AAC47982.1| Hypothetical protein E03H12.7 [Caenorhabditis elegans] 3.0E-56
blast AAA97989 Hypothetical protein T08H10.3 [Caenorhabditis elegans] ref|NP_504229.1| T08H10.3 [Caenorhabditis elegans] 3.0E-52
blast NP_500694 E03H12.7 [Caenorhabditis elegans] gb|AAC47982.1| Hypothetical protein E03H12.7 [Caenorhabditis elegans] 4.0E-45
blast AAA97989 Hypothetical protein T08H10.3 [Caenorhabditis elegans] ref|NP_504229.1| T08H10.3 [Caenorhabditis elegans] 4.0E-42
blast CAE71231 Hypothetical protein CBG18101 [Caenorhabditis briggsae] 2.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500694.1 1 10-27
E03H12.7 1 10-27
SNAP00000020612 1 10-27
GENEFINDER00000020621 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:184821_S_AT
gaatttatttctgattgtgctcgtcatttgcccttcatggattttgtgcaaaggaaagaa
aaaaccatccaatgcatcgccatccaagaagatgtcgtctgcagagccagccaaatcggc
aatcaagcctccaataactgatccaacaccaagcgcgttggccaaggttggctcagatga
gaaaaaagaagagccaaaggatgataagggagacacgaagagcccggctccagatggtga
tgccgctgctgcaaaaccggtcgaccaatcgcagaagccattccccaaattcgagatgcc
aacggagagtaagaagaagaaaaagatggctgaaaatgaggttgacaagaaggagaaaat
gaagaatgggttctatcaggaaaagtcggatgaagatgacacacttgaaaaagtggatag
tttgaaggttgagcaatccgataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTTATTTCTGATTGTGCTCGTC 413 325 45 Antisense
TTTCTGATTGTGCTCGTCATTTGCC 215 671 52 Antisense
GTCATTTGCCCTTCATGGATTTTGT 259 467 67 Antisense
AAAAAACCATCCAATGCATCGCCAT 44 131 103 Antisense
AGAAGATGTCGTCTGCAGAGCCAGC 42 75 131 Antisense
GTCTGCAGAGCCAGCCAAATCGGCA 139 471 141 Antisense
AAGCCTCCAATAACTGATCCAACAC 546 149 169 Antisense
GATCCAACACCAAGCGCGTTGGCCA 247 415 184 Antisense
GCGTTGGCCAAGGTTGGCTCAGATG 443 291 199 Antisense
GCCCGGCTCCAGATGGTGATGCCGC 487 285 266 Antisense
GTTTGAAGGTTGAGCAATCCGATAA 533 449 464 Antisense
Sequence Source Affymetrix Proprietary Database