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[184819_s_at]

Description Y66H1B.2 /REP_DB=WormBase Gene ID /WP=CE20346 /TR=Q9TYW5 /GB=AAC68999.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 47      6grp_total > 56      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2525
1 2 3 4 range
A 4257.9
(3)
P 		3322.1
(0.4)
P 		2767.7
(-1.1)
P 		2100
(-3)
P 		2158
B 4484.7
(3)
P 		2740
(-1.9)
P 		2605.7
(-2.3)
P 		2360
(-3)
P 		2125
C 3885
(3)
P 		2991.9
(0.2)
P 		2685.9
(-0.7)
P 		1960.2
(-3)
P 		1925
avr 4209.2
(3) 		3018
(-0.5) 		2686.4
(-1.4) 		2140.1
(-3) 		2069

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1426
1 2 3 4 5 6 range
A 3107.5
(-0.2)
P 		3757.1
(2.6)
P 		2435.6
(-3)
P 		2848.7
(-1.3)
P 		2999.7
(-0.6)
P 		3861.6
(3)
P 		1426
B 2880.3
(-1.6)
P 		3280.3
(3)
P 		3000.8
(-0.2)
P 		2845.3
(-2)
P 		2759
(-3)
P 		3255.5
(2.7)
P 		521
C 3487.4
(1.2)
P 		2997.2
(-1.5)
P 		3823.3
(3)
P 		2725.1
(-3)
P 		3340.5
(0.4)
P 		3178.6
(-0.5)
P 		1098
avr 3158.4
(0.4) 		3344.9
(2.2) 		3086.6
(-0.3) 		2806.4
(-3) 		3033.1
(-0.8) 		3431.9
(3) 		626
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1243
1 2 3 4 range
A 1550.3
(3)
P 		721.1
(-1)
P 		723.5
(-1)
P 		307.4
(-3)
P 		1243
B 1430.1
(3)
P 		676.7
(-1.9)
P 		603.8
(-2.3)
P 		502.9
(-3)
P 		927
C 1286
(3)
P 		860.2
(0.3)
P 		936.1
(0.8)
P 		330.5
(-3)
P 		956
avr 1422.1
(3) 		752.7
(-0.9) 		754.5
(-0.8) 		380.3
(-3) 		1042

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 806
1 2 3 4 5 6 range
A 572.8
(-2.7)
P 		1336.2
(3)
P 		530.4
(-3)
P 		722.5
(-1.6)
P 		905.2
(-0.2)
P 		940.2
(0.1)
P 		806
B 1002.2
(0.4)
P 		1091.9
(1.5)
P 		728.7
(-3)
P 		753.6
(-2.7)
P 		1121
(1.9)
P 		1214
(3)
P 		485
C 1292.6
(3)
P 		914.5
(-0)
P 		973.1
(0.4)
P 		548
(-3)
P 		1081
(1.3)
P 		1064.1
(1.2)
P 		745
avr 955.9
(0.8) 		1114.2
(3) 		744.1
(-2.1) 		674.7
(-3) 		1035.7
(1.9) 		1072.8
(2.4) 		440
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11048
Sequence Type Exemplar sequence
Representative Public ID Y66H1B.2 NCBI
Target Description Y66H1B.2 /REP_DB=WormBase Gene ID /WP=CE20346 /TR=Q9TYW5 /GB=AAC68999.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028380(11), NM_001028379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028380 NCBI Caenorhabditis elegans Y66H1B.2b (Y66H1B.2) mRNA, complete cds. 11/11 None
NM_001028379 NCBI Caenorhabditis elegans Y66H1B.2a (Y66H1B.2) mRNA, complete cds. 11/11 None
SNAP00000025521 ENSEMBL cdna:SNAP chromosome:CEL140:IV:359584:364340:-1 11/11 None
GENEFINDER00000025526 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:358809:376012:-1 11/11 None
Y66H1B.2b.3 ENSEMBL cdna:known chromosome:CEL140:IV:358768:364340:-1 gene:Y66H1B.2 11/11 None
Y66H1B.2b.2 ENSEMBL cdna:known chromosome:CEL140:IV:359123:364340:-1 gene:Y66H1B.2 11/11 None
Y66H1B.2b.1 ENSEMBL cdna:known chromosome:CEL140:IV:359237:364340:-1 gene:Y66H1B.2 11/11 None
Y66H1B.2a ENSEMBL cdna:known chromosome:CEL140:IV:359584:364340:-1 gene:Y66H1B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:359583-369263(-) 99.57 100.0
Public Domain and Genome References
Ensembl Y66H1B.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05553 Hypothetical protein Y66H1B.2b [Caenorhabditis elegans] ref|NP_001023551.1| Y66H1B.2b [Caenorhabditis elegans] 0.0
blast AAP13733 Hypothetical protein Y66H1B.2a [Caenorhabditis elegans] ref|NP_001023550.1| Y66H1B.2a [Caenorhabditis elegans] 0.0
blast ABA00151 Hypothetical protein Y66H1B.2c [Caenorhabditis elegans] 0.0
blast CAE65553 Hypothetical protein CBG10541 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 4.1E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-30
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.7E-26
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-29
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.2E-23
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.0E-16
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 4.1E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-30
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.7E-26
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-29
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.2E-23
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.0E-16
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 4.1E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-30
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.7E-26
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-29
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.2E-23
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.0E-16
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 2.2E-28
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.8E-27
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.5E-19
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-24
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.4E-9
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-20
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.9E-26
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 4.1E-5
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 7.0E-30
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.3E-6
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.7E-26
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 3.1E-8
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 1.6E-29
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 6.8E-10
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 5.2E-23
Pfam IPR001298 EMBL-EBI Filamin/ABP280 repeat 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:184819_S_AT
tggagccggaattctcactgttcagatggatggaccatcaaaggcaacattggatgctta
tgaactggagaaaggctacaaagtgagatatactccattggctccaggatcttactttgc
ttctgtcaagtacaatggaatccatgctccgggatctccgttcaagattcctgttgaagg
aaaagaattgggaggaaatgggtacaatgagacttcccatgttaagattgacgcagttgc
aaagacctcaaagggtactgtagctgtcgttccagaatatcaaggagatgccgctaaggt
caccgcaaaaggagccggtttgaacaagttcttcccaggacgtccagctgctttccaaat
cgacactggactcgctggaaccaatctgttgatggtgggagttgttacaacaaaaggacc
atgtgaggaagttgtcgtacgtcatcaaggatccggacattatgtgtgctcataccgtat
tccggataga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCCGGAATTCTCACTGTTCAG 633 547 3654 Antisense
GATATACTCCATTGGCTCCAGGATC 143 427 3740 Antisense
CCAGGATCTTACTTTGCTTCTGTCA 185 271 3757 Antisense
GATCTCCGTTCAAGATTCCTGTTGA 702 417 3806 Antisense
AAGGGTACTGTAGCTGTCGTTCCAG 479 159 3904 Antisense
CAAGGAGATGCCGCTAAGGTCACCG 292 183 3934 Antisense
TGAACAAGTTCTTCCCAGGACGTCC 337 571 3974 Antisense
CCAGCTGCTTTCCAAATCGACACTG 178 273 3997 Antisense
CACTGGACTCGCTGGAACCAATCTG 84 199 4017 Antisense
GTTGTCGTACGTCATCAAGGATCCG 500 395 4084 Antisense
GTGCTCATACCGTATTCCGGATAGA 128 479 4119 Antisense
Sequence Source Affymetrix Proprietary Database