[Home] | [Total List]

[184818_at]

Description T23B12.5 /REP_DB=WormBase Gene ID /WP=CE14034 /TR=O17000 /GB=AAB69937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_high_8_8 > 46      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 49      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 69.5
(-2.3)
P 		151.9
(0.7)
P 		212.7
(3)
P 		51.4
(-3)
A 		161
B 42.1
(-3)
M 		245.2
(3)
P 		137.2
(-0.2)
P 		58.7
(-2.5)
A 		203
C 49.3
(-3)
P 		185.9
(1.5)
P 		232
(3)
P 		81.9
(-1.9)
P 		183
avr 53.6
(-3) 		194.3
(3) 		194
(3) 		64
(-2.6) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 93.7
(-3)
P 		138.1
(-1.3)
P 		237.8
(2.6)
P 		178.4
(0.3)
P 		228.3
(2.3)
P 		247.1
(3)
P 		153
B 115.3
(-3)
P 		195.5
(-1)
P 		269.2
(0.8)
P 		251.8
(0.4)
P 		215.2
(-0.5)
P 		357.3
(3)
P 		242
C 80.8
(-3)
P 		228.1
(-0.2)
P 		171.9
(-1.3)
P 		183.3
(-1.1)
P 		172.3
(-1.3)
P 		401.4
(3)
P 		321
avr 96.6
(-3) 		187.2
(-0.7) 		226.3
(0.3) 		204.5
(-0.3) 		205.3
(-0.3) 		335.3
(3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 25.3
(-0.8)
P 		33
(0.2)
P 		55.6
(3)
P 		7.5
(-3)
A 		48
B 13.4
(-2.9)
M 		60.6
(3)
P 		31.8
(-0.6)
P 		12.5
(-3)
A 		48
C 16.3
(-2.8)
P 		53.5
(0.5)
P 		80.9
(3)
P 		13.8
(-3)
P 		67
avr 18.3
(-2.1) 		49
(2) 		56.1
(3) 		11.3
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 17.3
(-3)
P 		49.1
(0.7)
P 		51.8
(1)
P 		45.2
(0.2)
P 		68.9
(3)
P 		60.2
(2)
P 		52
B 40.1
(-3)
P 		65.1
(-1.4)
P 		65.4
(-1.4)
P 		66.7
(-1.3)
P 		87.4
(0)
P 		133.3
(3)
P 		93
C 29.9
(-3)
P 		69.6
(-0.7)
P 		43.7
(-2.2)
P 		36.9
(-2.6)
P 		55.7
(-1.5)
P 		134.4
(3)
P 		105
avr 29.1
(-3) 		61.3
(-0.6) 		53.6
(-1.2) 		49.6
(-1.5) 		70.7
(0.1) 		109.3
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11256
Sequence Type Exemplar sequence
Representative Public ID T23B12.5 NCBI
Target Description T23B12.5 /REP_DB=WormBase Gene ID /WP=CE14034 /TR=O17000 /GB=AAB69937.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072775 NCBI Caenorhabditis elegans T23B12.5 (T23B12.5) mRNA, complete cds. 11/11 None
SNAP00000041997 ENSEMBL cdna:SNAP chromosome:CEL140:V:8449285:8450200:-1 10/11 None
GENEFINDER00000042018 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8449285:8450492:-1 11/11 None
T23B12.5 ENSEMBL cdna:known chromosome:CEL140:V:8449285:8450492:-1 gene:T23B12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8449285-8450493(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B12.5
Entrez Gene 188777 Entrez gene
SwissProt O17000 EMBL-EBI
WormBase CE14034 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69937 Hypothetical protein T23B12.5 [Caenorhabditis elegans] ref|NP_505176.1| T23B12.5 [Caenorhabditis elegans] 1.0E-114
blast CAE66045 Hypothetical protein CBG11244 [Caenorhabditis briggsae] 7.0E-80
blast AAB69937 Hypothetical protein T23B12.5 [Caenorhabditis elegans] ref|NP_505176.1| T23B12.5 [Caenorhabditis elegans] 8.0E-74
blast CAE66045 Hypothetical protein CBG11244 [Caenorhabditis briggsae] 2.0E-60
blast CAA21585 Hypothetical protein Y11D7A.9 [Caenorhabditis elegans] ref|NP_501615.1| Y11D7A.9 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505176.1 6 5-27,47-65,78-100,110-129,149-171,181-203
T23B12.5 6 5-27,47-65,78-100,110-129,149-171,181-203
SNAP00000041997 4 12-34,44-61,81-103,113-135
GENEFINDER00000042018 6 5-27,47-65,78-100,110-129,149-171,181-203
Sequence
Target Sequence 
>C. ELEGANS:184818_AT
atttaccttctgtatctcgtttattaaatcttccccttgaaaggatattttggaactttt
tatctttatccagtgtaccacttcaattatttgtagtacttcgacagtatatgctgacat
tttcaacatcaaacaaacttcagttacttcgaataactctagtgatcagttcagtttttc
aaacgttatttctcaccctacttgcgacagttggtgaacgggaaagtggagactttcatg
tggcatttttctcgggtttcgcagtttctaccatagtcaattactcagttttcacaattc
ttatgaaattcaccgcatcgaaagaaagcccaaagcatggccgccgacgtgttgcagtac
ttcttggtcttgtagtaacgcttccaactattttcattgcgtttatcgctcacaatgttt
tttgtgttaaaggagcatacgaagcattcgcaatattcgaatatctcacaattttcttga
tctatgcattccacatgtcgaacttctacttgttttccaatccttctcatcggatactca
tttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTACCTTCTGTATCTCGTTTATT 595 15 107 Antisense
GACTTTCATGTGGCATTTTTCTCGG 671 371 337 Antisense
GGGTTTCGCAGTTTCTACCATAGTC 331 497 360 Antisense
AAGAAAGCCCAAAGCATGGCCGCCG 470 153 428 Antisense
GACGTGTTGCAGTACTTCTTGGTCT 667 377 452 Antisense
TGGTCTTGTAGTAACGCTTCCAACT 601 549 471 Antisense
TGCGTTTATCGCTCACAATGTTTTT 48 585 504 Antisense
ATTTTCTTGATCTATGCATTCCACA 348 15 577 Antisense
GCATTCCACATGTCGAACTTCTACT 476 307 592 Antisense
GAACTTCTACTTGTTTTCCAATCCT 513 347 606 Antisense
CCTTCTCATCGGATACTCATTTGCC 525 269 628 Antisense
Sequence Source Affymetrix Proprietary Database