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[184817_at]

Description F59A3.10 /REP_DB=WormBase Gene ID /WP=CE11434 /TR=P91362 /GB=AAB37824.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 32      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 20.1
(-2.3)
A 		16.1
(-3)
A 		52.2
(3)
A 		42.7
(1.4)
A 		36
B 21.6
(0.6)
A 		3.6
(-3)
A 		33.4
(3)
A 		15.8
(-0.5)
A 		30
C 4.3
(-3)
A 		31.6
(3)
A 		29.8
(2.6)
A 		26
(1.8)
A 		27
avr 15.3
(-3) 		17.1
(-2.5) 		38.5
(3) 		28.2
(0.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 17.6
(-0.3)
A 		17.7
(-0.2)
A 		34.2
(3)
A 		26.3
(1.5)
A 		3.6
(-3)
A 		4.6
(-2.8)
A 		31
B 35.2
(2.3)
A 		39.5
(3)
A 		19.2
(-0.2)
A 		1.8
(-3)
A 		21.9
(0.2)
A 		7.2
(-2.1)
A 		38
C 29.4
(0.4)
A 		37.3
(1.4)
A 		23.5
(-0.3)
A 		50
(3)
A 		1.7
(-3)
A 		3
(-2.8)
A 		48
avr 27.4
(2.1) 		31.5
(3) 		25.6
(1.7) 		26
(1.8) 		9.1
(-2.1) 		4.9
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.3
(-0.8)
A 		3.5
(-3)
A 		13.7
(3)
A 		6.2
(-1.4)
A 		10
B 6.9
(2.3)
A 		0.9
(-3)
A 		7.7
(3)
A 		3.4
(-0.8)
A 		7
C 1.4
(-3)
A 		9.1
(2.1)
A 		10.4
(3)
A 		4.4
(-1)
A 		9
avr 5.2
(-2.3) 		4.5
(-3) 		10.6
(3) 		4.7
(-2.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(-1)
A 		6.3
(2)
A 		7.4
(3)
A 		6.7
(2.3)
A 		1.1
(-3)
A 		1.1
(-3)
A 		6
B 12.2
(2.5)
A 		13.2
(3)
A 		4.7
(-1)
A 		0.5
(-3)
A 		8.9
(1)
A 		2.7
(-2)
A 		13
C 10.9
(2.7)
A 		11.4
(3)
A 		6
(-0)
A 		10.1
(2.3)
A 		0.6
(-3)
A 		1
(-2.8)
A 		11
avr 8.8
(2) 		10.3
(3) 		6
(0) 		5.8
(-0.1) 		3.5
(-1.7) 		1.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.530
Sequence Type Exemplar sequence
Representative Public ID F59A3.10 NCBI
Target Description F59A3.10 /REP_DB=WormBase Gene ID /WP=CE11434 /TR=P91362 /GB=AAB37824.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059221 NCBI Caenorhabditis elegans F59A3.10 (F59A3.10) mRNA, complete cds. 11/11 None
F59A3.10 ENSEMBL cdna:known chromosome:CEL140:I:5542633:5543337:-1 gene:F59A3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5542632-5543337(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A3.10
Entrez Gene 186580 Entrez gene
SwissProt P91362 EMBL-EBI
WormBase CE11434 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37824 Hypothetical protein F59A3.10 [Caenorhabditis elegans] ref|NP_491622.1| F59A3.10 [Caenorhabditis elegans] 4.0E-66
Sequence
Target Sequence 
>C. ELEGANS:184817_AT
atggctgcagattcgactacaataaaaatattcaattttttggaaaagttttactatgat
attttatcacttcatcatgcaatttctccagtgacgattgccacttttcccagtgacgaa
cgccaattcaataacttttggcgcctttttttgcgacaaactgcgggcggcgcgacaact
tatttttccgcttttcctttttttagagaaaattttttggaaagtgaatggccgaaggga
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTGCAGATTCGACTACAATAA 67 53 13 Antisense
ATCACTTCATCATGCAATTTCTCCA 30 29 78 Antisense
CAATTTCTCCAGTGACGATTGCCAC 252 181 92 Antisense
CTCCAGTGACGATTGCCACTTTTCC 524 235 98 Antisense
CACTTTTCCCAGTGACGAACGCCAA 427 191 114 Antisense
TCCCAGTGACGAACGCCAATTCAAT 404 597 120 Antisense
CAATTCAATAACTTTTGGCGCCTTT 699 179 136 Antisense
TTGGCGCCTTTTTTTGCGACAAACT 684 707 150 Antisense
TTTTGCGACAAACTGCGGGCGGCGC 266 677 161 Antisense
GGCGCGACAACTTATTTTTCCGCTT 355 541 181 Antisense
TGGAAAGTGAATGGCCGAAGGGAAC 229 545 230 Antisense
Sequence Source Affymetrix Proprietary Database