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[184816_at]

Description T27A10.5 /REP_DB=WormBase Gene ID /WP=CE07554 /TR=Q22819 /GB=AAB52503.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 38.6
(1)
A 		2.7
(-3)
A 		21.2
(-0.9)
A 		56
(3)
A 		53
B 16.8
(-0.4)
A 		5.4
(-3)
A 		12.4
(-1.4)
A 		31.7
(3)
A 		26
C 36
(-0.7)
A 		35.8
(-0.7)
A 		17.9
(-3)
A 		65.1
(3)
A 		47
avr 30.5
(-0.4) 		14.6
(-3) 		17.2
(-2.6) 		50.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 19.3
(-0.4)
A 		9.8
(-2)
A 		4.2
(-3)
A 		39.3
(3)
A 		19.2
(-0.4)
A 		31.6
(1.7)
A 		35
B 43.7
(3)
P 		22.4
(-0.7)
A 		9.5
(-2.9)
A 		41.3
(2.6)
A 		9.1
(-3)
A 		15
(-2)
A 		35
C 40.3
(3)
A 		16.2
(-2.6)
A 		22.4
(-1.1)
A 		24.1
(-0.8)
A 		14.4
(-3)
A 		16.4
(-2.5)
A 		26
avr 34.4
(2.9) 		16.1
(-1.9) 		12
(-3) 		34.9
(3) 		14.2
(-2.4) 		21
(-0.6) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.1
(3)
A 		0.6
(-3)
A 		5.5
(-0.8)
A 		8.2
(0.4)
A 		14
B 5.4
(1.5)
A 		1.3
(-3)
A 		2.9
(-1.3)
A 		6.8
(3)
A 		6
C 11.9
(3)
A 		10.3
(1.3)
A 		6.2
(-3)
A 		11
(2.1)
A 		6
avr 10.5
(3) 		4.1
(-3) 		4.9
(-2.3) 		8.7
(1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.6
(-1.2)
A 		3.5
(-1.3)
A 		0.9
(-3)
A 		10
(3)
A 		5.8
(0.2)
A 		7.7
(1.5)
A 		9
B 15.2
(3)
P 		7.5
(-0.6)
A 		2.3
(-3)
A 		10.9
(1)
A 		3.7
(-2.3)
A 		5.6
(-1.5)
A 		13
C 14.9
(3)
A 		4.9
(-2.9)
A 		5.7
(-2.4)
A 		4.8
(-2.9)
A 		4.7
(-3)
A 		5.5
(-2.5)
A 		10
avr 11.2
(3) 		5.3
(-1.3) 		3
(-3) 		8.6
(1.1) 		4.7
(-1.8) 		6.3
(-0.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18126
Sequence Type Exemplar sequence
Representative Public ID T27A10.5 NCBI
Target Description T27A10.5 /REP_DB=WormBase Gene ID /WP=CE07554 /TR=Q22819 /GB=AAB52503.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076213 NCBI Caenorhabditis elegans T27A10.5 (T27A10.5) mRNA, complete cds. 11/11 None
SNAP00000016180 ENSEMBL cdna:SNAP chromosome:CEL140:X:3573038:3573549:-1 11/11 None
GENEFINDER00000016185 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3573038:3573549:-1 11/11 None
T27A10.5 ENSEMBL cdna:known chromosome:CEL140:X:3573038:3573549:-1 gene:T27A10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3573038-3573550(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A10.5
Entrez Gene 188972 Entrez gene
SwissProt Q22819 EMBL-EBI
WormBase CE07554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52503 Hypothetical protein T27A10.5 [Caenorhabditis elegans] ref|NP_508614.1| T27A10.5 [Caenorhabditis elegans] 5.0E-60
Sequence
Target Sequence 
>C. ELEGANS:184816_AT
gtggtcccgactaagaaaacgattgaaccaaaacactacgctcatattgtggtctggccg
cattgcgaaaactcgaagtatcttctctattggttggaaaatgaattgaagttggaggtc
aatgtctacgaactcgacggcaattccgacaaagcgagaatcatctgggacgctgttttc
cccgggcgccctattgatccgaagatagtctttgccgaagttctgaagaaaacggatttt
gattacattacgctccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTCCCGACTAAGAAAACGATTG 504 485 28 Antisense
GATTGAACCAAAACACTACGCTCAT 104 433 48 Antisense
ACTACGCTCATATTGTGGTCTGGCC 294 101 62 Antisense
GGTCTGGCCGCATTGCGAAAACTCG 219 503 78 Antisense
CGAAGTATCTTCTCTATTGGTTGGA 24 253 101 Antisense
GGAGGTCAATGTCTACGAACTCGAC 195 515 141 Antisense
CGAACTCGACGGCAATTCCGACAAA 522 245 156 Antisense
AATCATCTGGGACGCTGTTTTCCCC 43 171 186 Antisense
GGCGCCCTATTGATCCGAAGATAGT 366 541 212 Antisense
GAAGATAGTCTTTGCCGAAGTTCTG 13 339 228 Antisense
GATTTTGATTACATTACGCTCCACC 224 427 262 Antisense
Sequence Source Affymetrix Proprietary Database