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[184814_at] 7TM chemoreceptor, srz family

Description Y9C9A.15 /REP_DB=WormBase Gene ID /WP=CE25649 /TR=Q9N2S2 /GB=AAF60937.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 13      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 6.7
(-2.7)
A 		7.8
(-2.6)
A 		2.4
(-3)
A 		77.5
(3)
A 		75
B 41.9
(3)
P 		11.7
(-1.7)
A 		12.3
(-1.6)
A 		3.2
(-3)
A 		39
C 35
(-0.7)
P 		14.7
(-2.4)
A 		8
(-3)
A 		78.9
(3)
P 		71
avr 27.9
(-0.3) 		11.4
(-2.5) 		7.6
(-3) 		53.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 39.9
(3)
A 		10.5
(-1.5)
A 		10.8
(-1.5)
A 		19.7
(-0.1)
A 		14.6
(-0.9)
A 		0.7
(-3)
A 		39
B 32
(3)
P 		14.9
(-0.5)
A 		29.3
(2.4)
M 		18.2
(0.2)
A 		2.8
(-3)
A 		7.9
(-2)
A 		29
C 20.2
(0.6)
A 		33.1
(3)
P 		11.8
(-1)
A 		1.4
(-3)
A 		10.5
(-1.3)
A 		3.3
(-2.6)
A 		32
avr 30.7
(3) 		19.5
(0.5) 		17.3
(-0) 		13.1
(-1) 		9.3
(-1.8) 		4
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-2)
A 		1.7
(-2.4)
A 		0.6
(-3)
A 		11.3
(3)
A 		11
B 13.4
(3)
P 		2.9
(-2)
A 		2.9
(-2)
A 		0.7
(-3)
A 		13
C 11.6
(2)
P 		4.2
(-2.2)
A 		2.8
(-3)
A 		13.3
(3)
P 		11
avr 9.1
(3) 		2.9
(-2.3) 		2.1
(-3) 		8.4
(2.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.3
(3)
A 		3.7
(-0)
A 		2.4
(-1.1)
A 		5
(1.1)
A 		4.4
(0.5)
A 		0.2
(-3)
A 		7
B 11.1
(3)
P 		5
(-0.7)
A 		7.1
(0.6)
M 		4.8
(-0.8)
A 		1.1
(-3)
A 		3
(-1.9)
A 		10
C 7.5
(1.4)
A 		10.1
(3)
P 		3
(-1.3)
A 		0.3
(-3)
A 		3.4
(-1.1)
A 		1.1
(-2.5)
A 		10
avr 8.6
(3) 		6.3
(1.1) 		4.2
(-0.7) 		3.4
(-1.3) 		3
(-1.7) 		1.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11026
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.15 NCBI
Target Description Y9C9A.15 /REP_DB=WormBase Gene ID /WP=CE25649 /TR=Q9N2S2 /GB=AAF60937.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068286 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-28) (srz-28) mRNA, complete cds. 11/11 None
Y9C9A.15 ENSEMBL cdna:known chromosome:CEL140:IV:4971661:4973193:-1 gene:Y9C9A.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4971666-4973199(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srz family
Gene Symbol srz-28
Ensembl Y9C9A.15
Entrez Gene 189420 Entrez gene
SwissProt Q9N2S2 EMBL-EBI
WormBase CE25649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500687 Serpentine Receptor, class Z family member (srz-28) [Caenorhabditis elegans] gb|AAF60937.1| Serpentine receptor, class z protein 28 [Caenorhabditis elegans] 1.0E-170
blast CAB05676 Hypothetical protein C08F11.9 [Caenorhabditis elegans] ref|NP_502634.2| Serpentine Receptor, class Z family member (srz-29) [Caenorhabditis elegans] 4.0E-42
blast AAU05587 Serpentine receptor, class z protein 67 [Caenorhabditis elegans] ref|NP_001021965.1| Serpentine Receptor, class Z family member (srz-67) [Caenorhabditis elegans] 3.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.7E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500687.1 7 20-42,82-104,108-127,148-170,180-202,223-245,255-277
Y9C9A.15 7 20-42,82-104,108-127,148-170,180-202,223-245,255-277
Sequence
Target Sequence 
>C. ELEGANS:184814_AT
tattagccattcaaaggttctttttattttatttcccgtcttctgaacgatcatccataa
aatttcaaaaattattcatcaaatatatcaattacgtctatacagtgtttgtctcaaaag
aaattctaacgattggtctgtacgctgtgaactggtttatcgatgtttcggttgagaaga
tgtccatgaaactgttttatttgtcaacatttatatttctcaattgtatgctaattgtaa
catcttgtttgtatattccaattatgatcagcgttcggaagttttcttatctaccatgtg
cgctgaaaaatagtccagaaaagtatattttattgcagacaaaagttacattgctgatga
aatccacttacatttttattttattatttcaatttttacatgatttggatgtaggatacg
ctttatttttcatggtagtccttgatatgatagccattccattaataaactcaatatcat
atattgtttgcaacaagcggaacgtgaaagcattctattcttcgttgaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTAGCCATTCAAAGGTTCTTTTT 378 663 356 Antisense
TTTCCCGTCTTCTGAACGATCATCC 650 667 387 Antisense
TACGTCTATACAGTGTTTGTCTCAA 135 649 448 Antisense
ACGATTGGTCTGTACGCTGTGAACT 171 93 484 Antisense
TGAACTGGTTTATCGATGTTTCGGT 107 573 503 Antisense
ATCAGCGTTCGGAAGTTTTCTTATC 526 27 622 Antisense
TTTTCTTATCTACCATGTGCGCTGA 112 677 637 Antisense
ACGCTTTATTTTTCATGGTAGTCCT 566 85 773 Antisense
GGTAGTCCTTGATATGATAGCCATT 135 505 789 Antisense
GATAGCCATTCCATTAATAAACTCA 21 423 804 Antisense
AAGCATTCTATTCTTCGTTGAAGCC 481 151 863 Antisense
Sequence Source Affymetrix Proprietary Database