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[184813_at]

Description C35A11.2 /REP_DB=WormBase Gene ID /WP=CE08581 /TR=O16546 /GB=AAB66038.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 238
1 2 3 4 range
A 3.8
(-3)
A 		197.1
(3)
M 		73
(-0.9)
A 		17.9
(-2.6)
A 		193
B 8.8
(-3)
A 		173.3
(3)
P 		125.7
(1.3)
M 		21.2
(-2.5)
A 		165
C 3.6
(-3)
A 		242
(3)
M 		208
(2.1)
P 		81.7
(-1)
A 		238
avr 5.4
(-3) 		204.1
(3) 		135.6
(0.9) 		40.3
(-1.9) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 71.4
(-2.6)
A 		79.6
(-2.4)
A 		45.5
(-3)
A 		237.4
(0.3)
P 		396.1
(3)
P 		137.6
(-1.4)
P 		351
B 51.3
(-3)
A 		68.3
(-2.7)
A 		130.5
(-1.5)
A 		305.5
(1.8)
P 		370.5
(3)
P 		162.1
(-0.9)
P 		319
C 25.4
(-2.8)
A 		84.1
(-1.7)
A 		14.8
(-3)
A 		340.9
(3)
P 		226.1
(0.9)
P 		131
(-0.9)
P 		326
avr 49.4
(-3) 		77.3
(-2.4) 		63.6
(-2.7) 		294.6
(2.2) 		330.9
(3) 		143.6
(-1) 		282
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 1.4
(-3)
A 		42.8
(3)
M 		19.1
(-0.4)
A 		2.6
(-2.8)
A 		41
B 2.8
(-3)
A 		42.8
(3)
P 		29.1
(0.9)
M 		4.5
(-2.7)
A 		40
C 1.2
(-3)
A 		69.6
(2.8)
M 		72.5
(3)
P 		13.8
(-1.9)
A 		71
avr 1.8
(-3) 		51.7
(3) 		40.2
(1.6) 		7
(-2.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 13.2
(-2.8)
A 		28.3
(-2)
A 		9.9
(-3)
A 		60.2
(-0.2)
P 		119.5
(3)
P 		33.5
(-1.7)
P 		110
B 17.9
(-3)
A 		22.7
(-2.8)
A 		31.7
(-2.4)
A 		80.9
(-0.1)
P 		150.5
(3)
P 		60.4
(-1.1)
P 		133
C 9.4
(-2.5)
A 		25.7
(-1.1)
A 		3.8
(-3)
A 		68.6
(2.6)
P 		73.2
(3)
P 		43.9
(0.5)
P 		69
avr 13.5
(-3) 		25.6
(-2.3) 		15.1
(-2.9) 		69.9
(0.4) 		114.4
(3) 		45.9
(-1.1) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12471
Sequence Type Exemplar sequence
Representative Public ID C35A11.2 NCBI
Target Description C35A11.2 /REP_DB=WormBase Gene ID /WP=CE08581 /TR=O16546 /GB=AAB66038.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072028 NCBI Caenorhabditis elegans C35A11.2 (C35A11.2) mRNA, complete cds. 11/11 None
SNAP00000019998 ENSEMBL cdna:SNAP chromosome:CEL140:V:5387454:5388968:1 11/11 None
GENEFINDER00000020004 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5387454:5388968:1 11/11 None
C35A11.2 ENSEMBL cdna:known chromosome:CEL140:V:5385922:5388968:1 gene:C35A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5385901-5388968(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35A11.2
Entrez Gene 183227 Entrez gene
SwissProt O16546 EMBL-EBI
WormBase CE35253 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66038 Hypothetical protein C35A11.2 [Caenorhabditis elegans] ref|NP_504429.2| C35A11.2 [Caenorhabditis elegans] 1.0E-118
blast CAE64636 Hypothetical protein CBG09398 [Caenorhabditis briggsae] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:184813_AT
tcagtgctcttcattgcatttctccatcaactggttgtcgtatcagacggaaaagtgaca
gcagaacaattggataaaaagcttggcgccggaatgaagcacgtctcctgtcagatgagg
atcaccggattttatatgaaaaggcactgtaaaaagcatttcaacacaacacttcgatgt
gatttaaatgagcacgaacgaaggacagtgaaaaaagttgcaaagctttgctgtgaagat
gctccaagctgtgagccaacggaattatttgatgaattttgctgccagggagatcattgt
gaagacactgaatgccacccgtgggatgactctgtggaagaaattcaacttgctaacctt
gttttctcatcagatgaagtgttcaatagcattcaggagaggataattgaacagatgaaa
attggaaatcgtcctgattattttccagaagtattaacagtttattataataatccagaa
ttaatttatgaaaatgagccatcattgcgacgatactttaaagctcatcggctacaggcc
gcccatattgcaaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTGCTCTTCATTGCATTTCTCC 454 623 391 Antisense
ATTTCTCCATCAACTGGTTGTCGTA 303 17 408 Antisense
AAGCACGTCTCCTGTCAGATGAGGA 392 151 487 Antisense
AGCTTTGCTGTGAAGATGCTCCAAG 508 77 614 Antisense
TGTGAAGACACTGAATGCCACCCGT 383 555 688 Antisense
GCCACCCGTGGGATGACTCTGTGGA 524 279 704 Antisense
AACTTGCTAACCTTGTTTTCTCATC 382 139 737 Antisense
GAAATCGTCCTGATTATTTTCCAGA 311 357 815 Antisense
ATGAGCCATCATTGCGACGATACTT 381 43 884 Antisense
TAAAGCTCATCGGCTACAGGCCGCC 200 641 909 Antisense
TACAGGCCGCCCATATTGCAAAATC 666 641 923 Antisense
Sequence Source Affymetrix Proprietary Database