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[184812_at]

Description Y74C9A.1 /REP_DB=WormBase Gene ID /WP=CE24659 /TR=Q9N4D5 /GB=AAF36048.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 11.9
(-3)
A 		18.9
(-2.4)
A 		34.9
(-1)
A 		81.9
(3)
A 		70
B 25.8
(0.7)
A 		7.4
(-3)
A 		37.5
(3)
A 		36.1
(2.7)
A 		30
C 15.4
(-1.9)
A 		51.3
(2.4)
A 		6.4
(-3)
A 		56.6
(3)
A 		50
avr 17.7
(-3) 		25.9
(-1.8) 		26.3
(-1.7) 		58.2
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 58.3
(1.4)
M 		24.6
(-2.1)
A 		15.5
(-3)
A 		51
(0.7)
A 		42.4
(-0.2)
A 		73.6
(3)
A 		58
B 12.4
(-3)
A 		36.8
(1.2)
A 		31.3
(0.2)
A 		34.5
(0.8)
A 		47.6
(3)
A 		43.5
(2.3)
A 		35
C 1.4
(-3)
A 		22.4
(-0.8)
A 		5.8
(-2.5)
A 		59.3
(3)
P 		16.3
(-1.5)
A 		35.2
(0.5)
A 		58
avr 24
(-1.8) 		27.9
(-1.1) 		17.5
(-3) 		48.3
(2.5) 		35.4
(0.2) 		50.8
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 4.3
(-2.8)
A 		4.1
(-3)
A 		9.1
(0.8)
A 		12
(3)
A 		8
B 8.2
(2.6)
A 		1.8
(-3)
A 		8.7
(3)
A 		7.7
(2.1)
A 		7
C 5.1
(-1.6)
A 		14.7
(3)
A 		2.2
(-3)
A 		9.6
(0.6)
A 		13
avr 5.9
(-3) 		6.9
(-1.5) 		6.7
(-1.8) 		9.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 10.8
(0.1)
M 		8.8
(-0.8)
A 		3.4
(-3)
A 		12.9
(0.9)
A 		12.8
(0.9)
A 		17.9
(3)
A 		15
B 4.3
(-3)
A 		12.3
(0.2)
A 		7.6
(-1.7)
A 		9.1
(-1.1)
A 		19.3
(3)
A 		16.2
(1.8)
A 		15
C 0.5
(-3)
A 		6.8
(0.3)
A 		1.5
(-2.5)
A 		11.9
(3)
P 		5.3
(-0.5)
A 		11.8
(2.9)
A 		11
avr 5.2
(-2.5) 		9.3
(-0.2) 		4.2
(-3) 		11.3
(0.8) 		12.5
(1.5) 		15.3
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2586
Sequence Type Exemplar sequence
Representative Public ID Y74C9A.1 NCBI
Target Description Y74C9A.1 /REP_DB=WormBase Gene ID /WP=CE24659 /TR=Q9N4D5 /GB=AAF36048.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058264(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058264 NCBI Caenorhabditis elegans Y74C9A.1 (Y74C9A.1) mRNA, complete cds. 9/11 None
SNAP00000028625 ENSEMBL cdna:SNAP chromosome:CEL140:I:43733:44677:1 9/11 None
GENEFINDER00000028627 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:43733:44699:1 9/11 None
Y74C9A.1 ENSEMBL cdna:known chromosome:CEL140:I:43733:44677:1 gene:Y74C9A.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:43732-44677(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y74C9A.1
Entrez Gene 190694 Entrez gene
SwissProt Q9N4D5 EMBL-EBI
WormBase CE34428 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36048 Hypothetical protein Y74C9A.1 [Caenorhabditis elegans] ref|NP_490665.2| Y74C9A.1 [Caenorhabditis elegans] 1.0E-117
blast AAF36048 Hypothetical protein Y74C9A.1 [Caenorhabditis elegans] ref|NP_490665.2| Y74C9A.1 [Caenorhabditis elegans] 6.0E-75
Sequence
Target Sequence 
>C. ELEGANS:184812_AT
gtggatcaagttcaccgattctcgaaacacagtcatctggcggtgcggaacttgacgaag
ttactgaggatgaatattctagtaattcgagcagtaatgaaactagcgacgaagaggaaa
actcagaagtaccaaatgtcttatctataacagaaagagagaaaagttggcaaaagttaa
cggaaaacgatttgggacgaattcgtttcatcttgaagtacactagcaatactaaaaaat
gcgtgaacgagtattttcaatataatcatgggcaaaacaatgaaattatgaaaagtctat
tattggataccgatggaactatgactgcaaaggcttgttcggaatgtgcctacgatttga
atcagtgccactgcaaaaaaccgcttcgcttcatcaatgctccgtgtggttgcacaaagg
ctcgaactgcggaagctcgcgcatctgaagaagctcaaatcaggattcaaatccaagaca
actcgaacgcattccaaagatcgtatcataacgatccacaaccttcatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATCAAGTTCACCGATTCTCGA 364 489 83 Antisense
AAACACAGTCATCTGGCGGTGCGGA 302 129 107 Antisense
CTGGCGGTGCGGAACTTGACGAAGT 618 239 119 Antisense
GGGACGAATTCGTTTCATCTTGAAG 647 493 276 Antisense
GGCTTGTTCGGAATGTGCCTACGAT 107 537 414 Antisense
GCAAAAAACCGCTTCGCTTCATCAA 409 317 455 Antisense
TCATCAATGCTCCGTGTGGTTGCAC 205 621 473 Antisense
GTGGTTGCACAAAGGCTCGAACTGC 633 489 488 Antisense
CTCGAACTGCGGAAGCTCGCGCATC 656 231 503 Antisense
TCCAAGACAACTCGAACGCATTCCA 288 587 554 Antisense
CATAACGATCCACAACCTTCATCAG 595 211 589 Antisense
Sequence Source Affymetrix Proprietary Database