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[184811_at]

Description T27A10.6 /REP_DB=WormBase Gene ID /WP=CE26727 /TR=Q22822 /GB=AAB52504.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 70      6grp_highest_nonorm > 52      6grp_total > 91      4grp_total > 49      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1245
1 2 3 4 range
A 100.9
(-2.9)
A 		970.1
(2)
P 		1147.7
(3)
P 		78.4
(-3)
A 		1069
B 47.7
(-3)
A 		1270.5
(3)
P 		1149.9
(2.4)
P 		88
(-2.8)
A 		1223
C 25.8
(-3)
A 		1076.7
(2.1)
P 		1269.8
(3)
P 		89.7
(-2.7)
A 		1244
avr 58.1
(-3) 		1105.8
(2.6) 		1189.1
(3) 		85.4
(-2.9) 		1131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 722
1 2 3 4 5 6 range
A 698.2
(1.3)
P 		867.4
(3)
P 		383.5
(-2)
P 		794.2
(2.2)
P 		806.8
(2.4)
P 		283.6
(-3)
P 		584
B 604.1
(0.1)
P 		820.7
(2)
P 		512.2
(-0.6)
P 		941.7
(3)
P 		596.9
(0.1)
P 		235.5
(-3)
P 		706
C 609.3
(1)
P 		730.5
(2.3)
P 		612.2
(1.1)
P 		796
(3)
P 		798.1
(3)
P 		219.7
(-3)
P 		578
avr 637.2
(0.9) 		806.2
(2.6) 		502.6
(-0.4) 		844
(3) 		733.9
(1.9) 		246.3
(-3) 		598
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 434
1 2 3 4 range
A 36.8
(-2.5)
A 		210.6
(1.1)
P 		300
(3)
P 		11.5
(-3)
A 		289
B 15.2
(-3)
A 		313.8
(3)
P 		266.5
(2)
P 		18.8
(-2.9)
A 		299
C 8.6
(-3)
A 		309.6
(1.2)
P 		442.6
(3)
P 		15.1
(-2.9)
A 		434
avr 20.2
(-2.9) 		278
(1.9) 		336.4
(3) 		15.1
(-3) 		321

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 128.7
(-1.5)
P 		308.5
(3)
P 		83.5
(-2.6)
P 		201.4
(0.3)
P 		243.5
(1.4)
P 		69
(-3)
P 		240
B 210.2
(1)
P 		273.2
(3)
P 		124.4
(-1.8)
P 		249.4
(2.2)
P 		242.5
(2)
P 		87.8
(-3)
P 		185
C 225.8
(1.9)
P 		222.9
(1.9)
P 		155.8
(-0.3)
P 		160.1
(-0.2)
P 		258.3
(3)
P 		73.6
(-3)
P 		185
avr 188.2
(0.5) 		268.2
(3) 		121.2
(-1.6) 		203.6
(1) 		248.1
(2.4) 		76.8
(-3) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18110
Sequence Type Exemplar sequence
Representative Public ID T27A10.6 NCBI
Target Description T27A10.6 /REP_DB=WormBase Gene ID /WP=CE26727 /TR=Q22822 /GB=AAB52504.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076216 NCBI Caenorhabditis elegans T27A10.6 (T27A10.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000016189 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3589029:3596338:-1 11/11 None
T27A10.6.2 ENSEMBL cdna:known chromosome:CEL140:X:3588855:3596340:-1 gene:T27A10.6 11/11 None
T27A10.6.1 ENSEMBL cdna:known chromosome:CEL140:X:3588855:3596447:-1 gene:T27A10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016183 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3589620-3596339(-) 99.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A10.6
Entrez Gene 180649 Entrez gene
SwissProt Q22822 EMBL-EBI
WormBase CE30193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52504 Hypothetical protein T27A10.6 [Caenorhabditis elegans] ref|NP_508617.2| T27A10.6 [Caenorhabditis elegans] 0.0
blast CAE68449 Hypothetical protein CBG14239 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184811_AT
acaacctgctccatctcagaagcagaaagtggtcgaagatagcccaagaatcgagtttca
ggaagatgaggaattggaggatgttatcaacaaggttaatcacagtttcatgagaagagt
caaaagagacaacttgagtgctcgccgtggagacattcgccgtgctcccgttcgaaacag
ttttgcggaagctcaatttgccgacaaagtatctctcccaagaaaggatgcagtgaaaac
ccatatcccacgaaatggtcttccaattgcactcgacatgatggaaccaatctcaatgac
gaatctggacggatttagttcatctgccagtgaaaattctcgagaagaagataatgcgaa
tcagaaccagcatttgagcaaaatgtccaatcctgaacttgatgaagaagagagcaaaga
agaaatcgaagaggtgtcggattccgagattgagattgacaataagatccccgtaacatt
cccaactcgtgccacccgtccaaccaccactgcctacgatccgaacaacttctatcacac
acctagacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACCTGCTCCATCTCAGAAGCAG 242 113 2016 Antisense
TTGAGTGCTCGCCGTGGAGACATTC 517 705 2149 Antisense
TGCTCCCGTTCGAAACAGTTTTGCG 293 581 2178 Antisense
TTTGCCGACAAAGTATCTCTCCCAA 435 667 2212 Antisense
GCAGTGAAAACCCATATCCCACGAA 535 311 2245 Antisense
GGTCTTCCAATTGCACTCGACATGA 582 503 2272 Antisense
GGACGGATTTAGTTCATCTGCCAGT 188 525 2322 Antisense
GAGCAAAATGTCCAATCCTGAACTT 144 391 2391 Antisense
GACAATAAGATCCCCGTAACATTCC 575 363 2473 Antisense
GCCTACGATCCGAACAACTTCTATC 614 281 2527 Antisense
CAACTTCTATCACACACCTAGACCA 186 189 2541 Antisense
Sequence Source Affymetrix Proprietary Database