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[184810_at]

Description C01B10.7 /REP_DB=WormBase Gene ID /WP=CE06738 /TR=Q17538 /GB=AAC47917.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 10.8
(-3)
A 		44.3
(3)
P 		44.4
(3)
P 		36.3
(1.6)
A 		34
B 17.5
(-2.8)
A 		18.5
(-2.7)
A 		51.4
(3)
M 		16.5
(-3)
A 		35
C 2.3
(-3)
A 		33.1
(1.3)
M 		18.1
(-0.8)
P 		45.2
(3)
P 		43
avr 10.2
(-3) 		32
(1.7) 		38
(3) 		32.7
(1.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 23.7
(2.4)
A 		12.2
(-0.5)
A 		2.1
(-3)
A 		22.1
(2)
A 		8.8
(-1.3)
A 		26
(3)
A 		24
B 1.2
(-3)
A 		20
(2.8)
P 		20.7
(3)
A 		19.2
(2.5)
A 		4.1
(-2.1)
A 		18.5
(2.3)
A 		20
C 0.2
(-3)
A 		14.1
(-0.6)
A 		34.8
(3)
A 		18.7
(0.2)
A 		1.4
(-2.8)
A 		7.8
(-1.7)
A 		35
avr 8.4
(-1.6) 		15.4
(1.2) 		19.2
(2.7) 		20
(3) 		4.8
(-3) 		17.4
(2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.9
(-3)
A 		9.6
(1.4)
P 		11.6
(3)
P 		5.3
(-1.9)
A 		8
B 5.6
(-1.5)
A 		4.6
(-2.2)
A 		11.9
(3)
M 		3.5
(-3)
A 		8
C 0.8
(-3)
A 		9.5
(3)
M 		6.3
(0.8)
P 		7.6
(1.7)
P 		9
avr 3.4
(-3) 		7.9
(1.2) 		9.9
(3) 		5.5
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.4
(1)
A 		4.3
(0.9)
A 		0.5
(-3)
A 		5.6
(2.3)
A 		2.7
(-0.7)
A 		6.3
(3)
A 		6
B 0.4
(-3)
A 		6.7
(2.8)
P 		5
(1.2)
A 		5.1
(1.3)
A 		1.7
(-1.8)
A 		6.9
(3)
A 		7
C 0.1
(-3)
A 		4.3
(-0.1)
A 		8.9
(3)
A 		3.8
(-0.5)
A 		0.4
(-2.8)
A 		2.6
(-1.3)
A 		9
avr 1.6
(-3) 		5.1
(2.7) 		4.8
(2.2) 		4.8
(2.2) 		1.6
(-3) 		5.3
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11046
Sequence Type Exemplar sequence
Representative Public ID C01B10.7 NCBI
Target Description C01B10.7 /REP_DB=WormBase Gene ID /WP=CE06738 /TR=Q17538 /GB=AAC47917.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068624(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068624 NCBI Caenorhabditis elegans C01B10.7 (C01B10.7) mRNA, complete cds. 11/11 None
C01B10.7 ENSEMBL cdna:known chromosome:CEL140:IV:6638298:6639248:1 gene:C01B10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026872 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6638303-6639254(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B10.7
Entrez Gene 182060 Entrez gene
SwissProt Q17538 EMBL-EBI
WormBase CE06738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47917 Hypothetical protein C01B10.7 [Caenorhabditis elegans] ref|NP_501025.1| C01B10.7 [Caenorhabditis elegans] 2.0E-80
blast AAF36039 Hypothetical protein Y73B6A.3 [Caenorhabditis elegans] ref|NP_501032.1| Y73B6A.3 [Caenorhabditis elegans] 2.0E-30
blast CAE69019 Hypothetical protein CBG15019 [Caenorhabditis briggsae] 3.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501025.1 1 34-56
C01B10.7 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:184810_AT
atgcggccaaaactattctataataactttggaactaaaaaatattttccgtcacaaaat
atgaaacttttaatttttgatcgtcagtttttctacaaaatagtattcattttggtaaca
acgagtaatttctatcaaactgtgttttttaatcttttaatttttatttccgcctctcac
cgtgcgccaggagctcgtcttgcaatagaatactacaaaccaaaaagtatcacacgttat
gtgaaaaatgcaaaaggagtagctcaagagcacattttcagggtgtgcaatgggaaaaac
aagacgaaatgtggatattgggagaatgtgaagacaaagaaaaaagtgggaccaaaaacg
acatatgacaaaaagaaggatatgttaattattgcaaaagtgtcaaaactcgatgcagga
acctacattacaccctcatatgatactgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGGCCAAAACTATTCTATAATA 36 41 13 Antisense
TTTTTGATCGTCAGTTTTTCTACAA 338 673 86 Antisense
AATAGTATTCATTTTGGTAACAACG 249 171 111 Antisense
AACAACGAGTAATTTCTATCAAACT 192 129 129 Antisense
CCAGGAGCTCGTCTTGCAATAGAAT 597 269 199 Antisense
AACCAAAAAGTATCACACGTTATGT 235 147 230 Antisense
TAGCTCAAGAGCACATTTTCAGGGT 374 651 272 Antisense
GTGGGACCAAAAACGACATATGACA 353 489 358 Antisense
GTGTCAAAACTCGATGCAGGAACCT 17 485 412 Antisense
TGCAGGAACCTACATTACACCCTCA 372 577 426 Antisense
CATTACACCCTCATATGATACTGTT 82 217 438 Antisense
Sequence Source Affymetrix Proprietary Database