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[184809_at]

Description T24D11.1 /REP_DB=WormBase Gene ID /WP=CE07531 /TR=Q22729 /GB=AAA93411.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 6.2
(-3)
A 		47.3
(2.4)
A 		52
(3)
A 		19.8
(-1.2)
A 		46
B 33.4
(3)
A 		22.3
(0.6)
A 		17.9
(-0.3)
A 		5.3
(-3)
A 		28
C 10.8
(-2.7)
A 		18.5
(-1.9)
A 		8.1
(-3)
A 		64.2
(3)
A 		56
avr 16.8
(-3) 		29.4
(2.8) 		26
(1.2) 		29.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 36.8
(2.9)
A 		8.9
(-2.3)
A 		7.1
(-2.7)
A 		8.1
(-2.5)
A 		37.6
(3)
A 		5.4
(-3)
A 		32
B 18
(1.3)
A 		23
(3)
A 		15.8
(0.5)
A 		7.8
(-2.3)
A 		21.7
(2.5)
A 		5.8
(-3)
A 		17
C 8.3
(0.1)
A 		11.7
(3)
A 		5.9
(-2)
A 		6.8
(-1.2)
A 		7.6
(-0.5)
A 		4.7
(-3)
A 		7
avr 21
(2.5) 		14.5
(0.2) 		9.6
(-1.5) 		7.6
(-2.2) 		22.3
(3) 		5.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.2
(-3)
A 		10.3
(1.3)
A 		13.6
(3)
A 		2.9
(-2.6)
A 		11
B 10.6
(3)
A 		5.5
(-0.2)
A 		4.2
(-1)
A 		1.1
(-3)
A 		10
C 3.6
(-2.4)
A 		5.3
(-1.1)
A 		2.8
(-3)
A 		10.8
(3)
A 		8
avr 5.5
(-1.3) 		7
(3) 		6.9
(2.7) 		4.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.8
(0.3)
A 		3.1
(-1.9)
A 		1.5
(-2.9)
A 		2.1
(-2.5)
A 		11.3
(3)
A 		1.3
(-3)
A 		10
B 6.3
(0.8)
A 		7.7
(2)
A 		3.8
(-1.5)
A 		2.1
(-3)
A 		8.8
(3)
A 		2.2
(-2.9)
A 		7
C 3.1
(1.6)
A 		3.6
(3)
A 		1.5
(-2.7)
A 		1.4
(-3)
A 		2.4
(-0.3)
A 		1.6
(-2.5)
A 		2
avr 5.4
(0.8) 		4.8
(0.2) 		2.3
(-2.4) 		1.9
(-2.8) 		7.5
(3) 		1.7
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17987
Sequence Type Exemplar sequence
Representative Public ID T24D11.1 NCBI
Target Description T24D11.1 /REP_DB=WormBase Gene ID /WP=CE07531 /TR=Q22729 /GB=AAA93411.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078266 NCBI Caenorhabditis elegans T24D11.1 (T24D11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014962 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16406051:16416754:-1 11/11 None
T24D11.1 ENSEMBL cdna:known chromosome:CEL140:X:16406121:16409159:-1 gene:T24D11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014961 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16406120-16409159(-) 96.74 100.0
Public Domain and Genome References
Gene Title
Ensembl T24D11.1
Entrez Gene 3565805 Entrez gene
SwissProt Q22729 EMBL-EBI
WormBase CE07531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246482_AT plant adhesion molecule 1 (PAM1) at
CANINE_2:CFA.17019.1.S1_AT similar to ecotropic viral integration site 5 cfa
CANINE_2:CFA.17019.1.S1_S_AT similar to ecotropic viral integration site 5 cfa
CANINE_2:CFA.19956.1.S1_AT similar to ecotropic viral integration site 5 cfa
CANINE_2:CFA.19956.1.S1_S_AT similar to ecotropic viral integration site 5 cfa
CANINE_2:CFAAFFX.30864.1.S1_AT similar to ecotropic viral integration site 5 cfa
CANINE_2:CFAAFFX.30865.1.S1_S_AT similar to ecotropic viral integration site 5 cfa
DROSOPHILA_2:1638996_AT dm
DROSOPHILA_2:1626533_A_AT dm
DROSGENOME1:144875_AT dm
CHICKEN:GGA.16715.1.S1_AT ecotropic viral integration site 5 gga
CHICKEN:GGAAFFX.26671.1.S1_AT ecotropic viral integration site 5 gga
CHICKEN:GGAAFFX.26671.1.S1_S_AT ecotropic viral integration site 5 gga
MU11KSUBA:U53586_S_AT ecotropic viral integration site 5 mm
MG-U74AV2:98503_AT ecotropic viral integration site 5 mm
MOE430A:1417512_AT ecotropic viral integration site 5 mm
MOUSE430A_2:1417512_AT ecotropic viral integration site 5 mm
MOUSE430_2:1417512_AT ecotropic viral integration site 5 mm
MOE430A:1417513_AT ecotropic viral integration site 5 mm
MOUSE430A_2:1417513_AT ecotropic viral integration site 5 mm
MOUSE430_2:1417513_AT ecotropic viral integration site 5 mm
MOE430B:1442509_AT Ecotropic viral integration site 5 (Evi5), mRNA mm
MOUSE430_2:1442509_AT Ecotropic viral integration site 5 (Evi5), mRNA mm
Protein Similarities
Method ID Description E-Value
blast AAA93411 Hypothetical protein T24D11.1 [Caenorhabditis elegans] ref|NP_510667.1| T24D11.1 [Caenorhabditis elegans] 0.0
blast CAE69971 Hypothetical protein CBG16368 [Caenorhabditis briggsae] 0.0
blast EAL40942 ENSANGP00000028258 [Anopheles gambiae str. PEST] ref|XP_563846.1| ENSANGP00000028258 [Anopheles gambiae str. PEST] 1.0E-103
blast XP_422340 PREDICTED: similar to ecotropic viral integration site 5 [Gallus gallus] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 4.3E-34
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 4.3E-34
Sequence
Target Sequence 
>C. ELEGANS:184809_AT
ggagtgtctcgtgcaggatcaaatgccagatttgtatactcattttaataatatgggatt
cgacacgtcaatgtatgcgtcttcgtggtttttgacacttttcacaactacaatgccttt
ggacattgccaatagaattatggattgctttttggtagaaggaatggattttatattttg
catttccatcgcgattcttcaacaagctcgcatcgagcttctccgtctcgatatggaagg
aatgctcaaatacttccagcgtgaagttcgcgagcgatatgaatttgacgctgatcttct
tttcacggttgccaatcaagttcaactgaatgctaaaaggatgaagcgtctggaaaagga
ttacttgacgaagcgtaccaaggagcaggaggaggccgtcgagctgcgggtaagtcagaa
atatgggatcataaaatgctacgggcaagatgatgttttgcggggccgccgccgcggcgg
cacgttttgctctttttttttcctggtggcgcgaaattcacgagcacatgtttccgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTGTCTCGTGCAGGATCAAATG 197 517 867 Antisense
GACACGTCAATGTATGCGTCTTCGT 614 367 928 Antisense
GCGTCTTCGTGGTTTTTGACACTTT 266 291 943 Antisense
GACACTTTTCACAACTACAATGCCT 377 367 960 Antisense
ATATTTTGCATTTCCATCGCGATTC 445 19 1039 Antisense
AGCTTCTCCGTCTCGATATGGAAGG 139 79 1082 Antisense
GAATGCTCAAATACTTCCAGCGTGA 286 331 1106 Antisense
CTTTTCACGGTTGCCAATCAAGTTC 619 217 1165 Antisense
GAGCAGGAGGAGGCCGTCGAGCTGC 124 387 1249 Antisense
TCCTGGTGGCGCGAAATTCACGAGC 207 591 1367 Antisense
AATTCACGAGCACATGTTTCCGCGA 566 175 1381 Antisense
Sequence Source Affymetrix Proprietary Database