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[184808_s_at]

Description R12E2.13 /REP_DB=WormBase Gene ID /WP=CE18145 /TR=O61793 /GB=AAC17034.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 56      6grp_total > 90      4grp_total > 09      6grp_highest_sub > 04      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4437
1 2 3 4 range
A 1566.6
(-3)
P 		2439.8
(-1.8)
P 		2238.3
(-2.1)
P 		5855
(3)
P 		4288
B 1512.2
(-3)
P 		2187.6
(-2.1)
P 		2580.5
(-1.6)
P 		5948.8
(3)
P 		4437
C 1752.3
(-3)
P 		2126.6
(-2.4)
P 		2303.5
(-2.1)
P 		5618.2
(3)
P 		3866
avr 1610.4
(-3) 		2251.3
(-2.1) 		2374.1
(-1.9) 		5807.3
(3) 		4197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 2030.5
(1.8)
P 		1831.4
(-1.8)
P 		1791.8
(-2.5)
P 		2003.2
(1.3)
P 		2095
(3)
P 		1765
(-3)
P 		330
B 2061.7
(-0.2)
P 		1782.5
(-3)
P 		2099.1
(0.2)
P 		2373.5
(3)
P 		2274.6
(2)
P 		2011.7
(-0.7)
P 		591
C 1652.7
(-3)
P 		1909.8
(-1.2)
P 		1693.3
(-2.7)
P 		2490.8
(3)
P 		1921.8
(-1.1)
P 		2154.4
(0.6)
P 		838
avr 1915
(-2) 		1841.2
(-3) 		1861.4
(-2.7) 		2289.2
(3) 		2097.1
(0.4) 		1977
(-1.2) 		448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 786
1 2 3 4 range
A 570.4
(-2.3)
P 		529.6
(-3)
P 		585.1
(-2)
P 		857.1
(3)
P 		328
B 482.2
(-3)
P 		540.3
(-2.6)
P 		598
(-2.1)
P 		1267.7
(3)
P 		786
C 580
(-3)
P 		611.4
(-2.5)
P 		802.8
(0.6)
P 		947.3
(3)
P 		367
avr 544.2
(-3) 		560.4
(-2.8) 		662
(-1.5) 		1024
(3) 		480

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 550
1 2 3 4 5 6 range
A 374.3
(-3)
P 		651.3
(3)
P 		390.2
(-2.7)
P 		508.1
(-0.1)
P 		632.2
(2.6)
P 		429.7
(-1.8)
P 		277
B 717.4
(0)
P 		593.3
(-1.8)
P 		509.7
(-3)
P 		628.7
(-1.3)
P 		924.1
(3)
P 		750.1
(0.5)
P 		414
C 612.6
(0.8)
P 		582.7
(0.1)
P 		431
(-3)
P 		500.9
(-1.6)
P 		621.9
(0.9)
P 		721.2
(3)
P 		290
avr 568.1
(-0.4) 		609.1
(0.5) 		443.6
(-3) 		545.9
(-0.8) 		726.1
(3) 		633.7
(1) 		283
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184808_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2411
Sequence Type Exemplar sequence
Representative Public ID R12E2.13 NCBI
Target Description R12E2.13 /REP_DB=WormBase Gene ID /WP=CE18145 /TR=O61793 /GB=AAC17034.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058919(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058919 NCBI Caenorhabditis elegans R12E2.13 (R12E2.13) mRNA, complete cds. 11/11 None
SNAP00000012685 ENSEMBL cdna:SNAP chromosome:CEL140:I:4177419:4178436:-1 11/11 None
GENEFINDER00000012690 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4177419:4178436:-1 11/11 None
R12E2.13.1 ENSEMBL cdna:known chromosome:CEL140:I:4177301:4178450:-1 gene:R12E2.13 11/11 None
R12E2.13.2 ENSEMBL cdna:known chromosome:CEL140:I:4177311:4178450:-1 gene:R12E2.13 11/11 None
R12E2.13.3 ENSEMBL cdna:known chromosome:CEL140:I:4177336:4178448:-1 gene:R12E2.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4177418-4178436(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R12E2.13
Entrez Gene 172010 Entrez gene
SwissProt O61793 EMBL-EBI
WormBase CE18145 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14078_AT MIR domain-containing protein at
ATH1-121501:264382_AT MIR domain-containing protein at
CANINE:1583684_AT similar to Stromal cell-derived factor 2 precursor (SDF-2) cfa
CANINE_2:CFA.10434.1.A1_AT similar to Stromal cell-derived factor 2 precursor (SDF-2) cfa
CANINE_2:CFAAFFX.28636.1.S1_S_AT similar to Stromal cell-derived factor 2 precursor (SDF-2) cfa
DROSOPHILA_2:1623356_AT dm
DROSGENOME1:149321_AT dm
HG-U133_PLUS_2:203090_AT stromal cell-derived factor 2 hs
HG-U133A:203090_AT stromal cell-derived factor 2 hs
HG-FOCUS:203090_AT stromal cell-derived factor 2 hs
HG-U133A_2:203090_AT stromal cell-derived factor 2 hs
HUGENEFL:D50645_AT stromal cell-derived factor 2 hs
U133_X3P:G5902073_3P_AT stromal cell-derived factor 2 hs
HG-U95AV2:41627_AT stromal cell-derived factor 2 hs
HG-U95D:89939_AT stromal cell-derived factor 2 hs
HG-U95D:89941_G_AT stromal cell-derived factor 2 hs
MU11KSUBA:D50646_S_AT stromal cell derived factor 2 mm
MG-U74AV2:101967_AT stromal cell derived factor 2 mm
MOE430A:1416857_AT stromal cell derived factor 2 mm
MOUSE430A_2:1416857_AT stromal cell derived factor 2 mm
MOUSE430_2:1416857_AT stromal cell derived factor 2 mm
MU19KSUBB:TC33095_AT Stromal cell derived factor 2 (Sdf2), mRNA mm
MU19KSUBB:TC33096_S_AT Stromal cell derived factor 2 (Sdf2), mRNA mm
RG-U34C:RC_AI145682_AT stromal cell derived factor 2 (predicted) rn
RAE230A:1371645_AT stromal cell derived factor 2 (predicted) rn
RAT230_2:1371645_AT stromal cell derived factor 2 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491320 R12E2.13 [Caenorhabditis elegans] gb|AAC17034.1| Hypothetical protein R12E2.13 [Caenorhabditis elegans] 1.0E-108
blast 1T9F Chain , Structural Genomics Of Caenorhabditis Elegans: Structure Of A Protein With Unknown Function 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR003608 EMBL-EBI MIR domain 1.4E-13
Pfam IPR003608 EMBL-EBI MIR domain 2.6E-16
Pfam IPR003608 EMBL-EBI MIR domain 2.2E-8
Sequence
Target Sequence 
>C. ELEGANS:184808_S_AT
aattgccactactactcagttttccacttctattcttcgcctcatttgcatacgccgatg
aagactttgtgacgtgctacagcgttttaaagtttataaatgctaatgatggctctaggt
tacattcgcatgacgtaaaatacggaagcgggtccggccaacaatctgtgactgctgtaa
aaaactcggacgacatcaattctcattggcagattttcccagctttgaacgcaaaatgca
atcgtggagatgcaatcaaatgcggagacaagatccgtctgaagcacctcaccacgggca
cgttcctgcattcccatcatttcactgcacctctctccaaacaacatcaggaggtctccg
cttttggcagcgaagcagaaagtgacacgggagatgattggactgtgatttgcaacggag
atgagtggttggaatccgagcaattcaaacttcgccacgctgtcactggttcatacctct
cactctcgggacaacaattcggacgccccattcatggacaacgggaggtcgtcggcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCCACTACTACTCAGTTTTCC 197 179 20 Antisense
GAAGACTTTGTGACGTGCTACAGCG 346 339 79 Antisense
TGGCTCTAGGTTACATTCGCATGAC 453 545 129 Antisense
CGGCCAACAATCTGTGACTGCTGTA 317 239 174 Antisense
AACTCGGACGACATCAATTCTCATT 416 141 202 Antisense
CAGATTTTCCCAGCTTTGAACGCAA 278 207 229 Antisense
CACCTCTCTCCAAACAACATCAGGA 653 201 347 Antisense
ACATCAGGAGGTCTCCGCTTTTGGC 197 105 363 Antisense
CGAGCAATTCAAACTTCGCCACGCT 244 251 456 Antisense
CTCTCGGGACAACAATTCGGACGCC 153 229 502 Antisense
ATGGACAACGGGAGGTCGTCGGCAC 635 49 533 Antisense
Sequence Source Affymetrix Proprietary Database