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[184807_at]

Description K04F1.12 /REP_DB=WormBase Gene ID /WP=CE19963 /TR=Q9TXL7 /GB=AAC78171.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 115.4
(3)
P 		62.9
(-0.8)
A 		37
(-2.7)
A 		33.5
(-3)
A 		82
B 86.5
(1.2)
P 		44.6
(-1.4)
A 		18.7
(-3)
A 		114.5
(3)
P 		96
C 110.1
(1.7)
P 		44.2
(-2.5)
A 		35.9
(-3)
A 		129.7
(3)
P 		94
avr 104
(3) 		50.6
(-1.4) 		30.5
(-3) 		92.6
(2.1) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 49.2
(3)
A 		39.5
(1.7)
A 		38.1
(1.5)
A 		37.1
(1.4)
M 		4.8
(-3)
A 		32.9
(0.8)
A 		44
B 56.1
(3)
P 		33.8
(-1.7)
A 		35.9
(-1.2)
A 		48.3
(1.4)
A 		27.4
(-3)
A 		34.9
(-1.4)
A 		29
C 74.1
(3)
A 		52.5
(0.9)
A 		53.5
(1)
A 		50.8
(0.7)
A 		12.7
(-3)
A 		45.3
(0.2)
P 		61
avr 59.8
(3) 		41.9
(0.6) 		42.5
(0.7) 		45.4
(1.1) 		15
(-3) 		37.7
(0) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 42
(3)
P 		13.6
(-1.6)
A 		9.7
(-2.2)
A 		4.9
(-3)
A 		37
B 27.6
(3)
P 		11
(-1.3)
A 		4.3
(-3)
A 		24.4
(2.2)
P 		23
C 36.4
(3)
P 		12.7
(-2.9)
A 		12.5
(-3)
A 		21.9
(-0.6)
P 		24
avr 35.3
(3) 		12.4
(-2.2) 		8.8
(-3) 		17.1
(-1.1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.1
(0.6)
A 		14
(3)
A 		8.3
(0.3)
A 		9.4
(0.8)
M 		1.5
(-3)
A 		8
(0.1)
A 		13
B 19.5
(3)
P 		11.2
(-1.6)
A 		8.7
(-3)
A 		12.8
(-0.7)
A 		11.2
(-1.6)
A 		13
(-0.6)
A 		11
C 27.5
(3)
A 		16
(0.1)
A 		13.6
(-0.6)
A 		10.2
(-1.4)
A 		4.1
(-3)
A 		15.1
(-0.2)
P 		23
avr 18.7
(3) 		13.7
(0.7) 		10.2
(-0.9) 		10.8
(-0.6) 		5.6
(-3) 		12
(-0.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15457
Sequence Type Exemplar sequence
Representative Public ID K04F1.12 NCBI
Target Description K04F1.12 /REP_DB=WormBase Gene ID /WP=CE19963 /TR=Q9TXL7 /GB=AAC78171.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071069 NCBI Caenorhabditis elegans K04F1.12 (K04F1.12) mRNA, complete cds. 11/11 None
SNAP00000011960 ENSEMBL cdna:SNAP chromosome:CEL140:V:1655029:1657155:1 9/11 None
GENEFINDER00000011978 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1655029:1657193:1 11/11 None
K04F1.12 ENSEMBL cdna:known chromosome:CEL140:V:1654918:1657074:1 gene:K04F1.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1654917-1657074(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04F1.12
Entrez Gene 186998 Entrez gene
SwissProt Q9TXL7 EMBL-EBI
WormBase CE19963 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78171 Hypothetical protein K04F1.12 [Caenorhabditis elegans] ref|NP_503470.1| K04F1.12 [Caenorhabditis elegans] 0.0
blast AAC78171 Hypothetical protein K04F1.12 [Caenorhabditis elegans] ref|NP_503470.1| K04F1.12 [Caenorhabditis elegans] 1.0E-157
blast CAE62394 Hypothetical protein CBG06481 [Caenorhabditis briggsae] 6.0E-82
blast CAE62394 Hypothetical protein CBG06481 [Caenorhabditis briggsae] 5.0E-77
blast CAE62393 Hypothetical protein CBG06480 [Caenorhabditis briggsae] 3.0E-62
blast CAE62393 Hypothetical protein CBG06480 [Caenorhabditis briggsae] 3.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-23
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.7E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.9E-22
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-23
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 3.7E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503470.1 1 12-34
K04F1.12 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:184807_AT
agaaatgtctaatctccagagtaacaaagatatcgtttttggattaaatgggatttctgg
aaaatactgtccagcttcaaaatccgatgttgcgttgggcactttgtgcaatatagaaaa
ctccacattatccgagattaattccacgtgtgtaaacctggttggagatttgatcattga
tgaatcaaatgaggaacatgttcagaagttgaacagcgttgaatcaatttttggaagtct
tactattgacaatacaaacctaacgagcattgattttttaagcaagttaaaaaatattgt
tagtttaaaagaaaatcatcttgctatccgagttgaatacaactccgaactaactaatgt
atcgtttccggaaattcaaagagtcgaatctcgagtatatgtcccaattgttttcaataa
taatagtcaggagcttttgatgagcccaagtttttgcaatgacatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAATGTCTAATCTCCAGAGTAAC 222 73 693 Antisense
ATACTGTCCAGCTTCAAAATCCGAT 352 23 756 Antisense
GATGTTGCGTTGGGCACTTTGTGCA 445 409 778 Antisense
ATCCGAGATTAATTCCACGTGTGTA 92 39 822 Antisense
ATTCCACGTGTGTAAACCTGGTTGG 559 5 833 Antisense
GAAAATCATCTTGCTATCCGAGTTG 609 353 1003 Antisense
GAATACAACTCCGAACTAACTAATG 572 321 1027 Antisense
GTCGAATCTCGAGTATATGTCCCAA 333 475 1075 Antisense
GTATATGTCCCAATTGTTTTCAATA 677 453 1087 Antisense
CAGGAGCTTTTGATGAGCCCAAGTT 474 207 1120 Antisense
GCCCAAGTTTTTGCAATGACATCAG 385 287 1136 Antisense
Sequence Source Affymetrix Proprietary Database