[Home] | [Total List]

[184806_at]

Description F46F5.10 /REP_DB=WormBase Gene ID /WP=CE19426 /TR=Q9TXY5 /GB=AAC78188.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 2.7
(-2.9)
A 		1.7
(-3)
A 		2
(-3)
A 		72.5
(3)
A 		71
B 5.7
(3)
A 		4.8
(1.3)
A 		2.6
(-3)
A 		3.9
(-0.5)
A 		3
C 3.2
(-2.7)
A 		28.8
(3)
A 		1.7
(-3)
A 		8.9
(-1.4)
A 		27
avr 3.9
(-2.6) 		11.8
(-0.8) 		2.1
(-3) 		28.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 1.8
(-3)
A 		4.8
(-2.4)
A 		5.5
(-2.2)
A 		5.5
(-2.2)
A 		29.9
(3)
A 		3.1
(-2.7)
A 		28
B 5.9
(3)
A 		4.5
(1.3)
A 		4.2
(0.9)
A 		1.9
(-1.9)
A 		3.7
(0.3)
A 		1
(-3)
A 		5
C 13.5
(-0.8)
A 		5.7
(-2.3)
A 		5.3
(-2.4)
A 		33.1
(3)
A 		2
(-3)
A 		24.1
(1.3)
A 		31
avr 7.1
(-1.5) 		5
(-3) 		5
(-3) 		13.5
(3) 		11.9
(1.9) 		9.4
(0.1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1
(-2.6)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		10.6
(3)
A 		10
B 1.8
(3)
A 		1.2
(-0)
A 		0.6
(-3)
A 		0.8
(-2)
A 		1
C 1
(-2.7)
A 		8.3
(3)
A 		0.6
(-3)
A 		1.5
(-2.3)
A 		8
avr 1.3
(-1.9) 		3.3
(1.4) 		0.6
(-3) 		4.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1.7
(-2)
A 		1.2
(-2.4)
A 		1.4
(-2.2)
A 		9
(3)
A 		0.8
(-2.7)
A 		9
B 2.1
(3)
A 		1.5
(0.9)
A 		1
(-0.9)
A 		0.5
(-2.6)
A 		1.5
(0.9)
A 		0.4
(-3)
A 		2
C 5
(0.5)
A 		1.7
(-2.2)
A 		1.4
(-2.4)
A 		6.7
(1.9)
A 		0.7
(-3)
A 		8.1
(3)
A 		7
avr 2.5
(0.1) 		1.6
(-2) 		1.2
(-3) 		2.9
(1.1) 		3.7
(3) 		3.1
(1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5761
Sequence Type Exemplar sequence
Representative Public ID F46F5.10 NCBI
Target Description F46F5.10 /REP_DB=WormBase Gene ID /WP=CE19426 /TR=Q9TXY5 /GB=AAC78188.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061422 NCBI Caenorhabditis elegans F46F5.10 (F46F5.10) mRNA, complete cds. 11/11 None
SNAP00000029526 ENSEMBL cdna:SNAP chromosome:CEL140:II:824166:825251:1 11/11 None
GENEFINDER00000029538 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:823835:825145:1 9/11 None
F46F5.10 ENSEMBL cdna:known chromosome:CEL140:II:823835:825251:1 gene:F46F5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:823834-825251(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.10
Entrez Gene 185863 Entrez gene
SwissProt Q9TXY5 EMBL-EBI
WormBase CE19426 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78188 Hypothetical protein F46F5.10 [Caenorhabditis elegans] ref|NP_493823.1| F46F5.10 [Caenorhabditis elegans] 0.0
blast AAC78188 Hypothetical protein F46F5.10 [Caenorhabditis elegans] ref|NP_493823.1| F46F5.10 [Caenorhabditis elegans] 1.0E-162
blast NP_503702 Y45G12C.1 [Caenorhabditis elegans] gb|AAF60579.1| Hypothetical protein Y45G12C.1 [Caenorhabditis elegans] 1.0E-125
blast CAC70074 Hypothetical protein C06B8.2b [Caenorhabditis elegans] emb|CAC70106.2| Hypothetical protein C06B8.2b [Caenorhabditis elegans] ref|NP_506853.2| C06B8.2b [Caenorhabditis elegans] 1.0E-119
blast NP_503702 Y45G12C.1 [Caenorhabditis elegans] gb|AAF60579.1| Hypothetical protein Y45G12C.1 [Caenorhabditis elegans] 1.0E-110
blast CAC70074 Hypothetical protein C06B8.2b [Caenorhabditis elegans] emb|CAC70106.2| Hypothetical protein C06B8.2b [Caenorhabditis elegans] ref|NP_506853.2| C06B8.2b [Caenorhabditis elegans] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493823.1 1 5-22
F46F5.10 1 5-22
GENEFINDER00000029538 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:184806_AT
gtttggtggctcgatgctcataatagatggctccaaccaaaaccattgagttatatgtat
gaagaaatggctcaatgttataataatgatgattgtaaaaagaactcttcaatattcatg
tttctcaactcaactcatagtaactatgctgtattgaattatgggcttcttgattacttt
ccaacatatgatctgaatgaactgaaaaccaatgaagcgggacttcaattgtctgcaatg
ttcgtttatttggcaagaactccatttacgttagaagttctcaaatggcatactctatgc
gcattagaagataagtgtatgaatccaccaaaggctaaacttgaatgtaaaactattcca
tcttgggacatttatgcagaatgtttccggtatgatcaatcatcgatcaatcttatcatg
ttcaactttttccgtaaccataatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGGTGGCTCGATGCTCATAATA 381 451 628 Antisense
GGCTCCAACCAAAACCATTGAGTTA 542 539 656 Antisense
GAACTCTTCAATATTCATGTTTCTC 580 349 729 Antisense
CATGTTTCTCAACTCAACTCATAGT 173 211 744 Antisense
GGGCTTCTTGATTACTTTCCAACAT 213 493 790 Antisense
GAAGCGGGACTTCAATTGTCTGCAA 36 345 841 Antisense
GTCTGCAATGTTCGTTTATTTGGCA 575 471 858 Antisense
GAAGTTCTCAAATGGCATACTCTAT 184 337 901 Antisense
AAAACTATTCCATCTTGGGACATTT 204 131 976 Antisense
GCAGAATGTTTCCGGTATGATCAAT 407 313 1003 Antisense
TCAACTTTTTCCGTAACCATAATCA 49 631 1049 Antisense
Sequence Source Affymetrix Proprietary Database