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[184805_at]

Description H35N09.2 /REP_DB=WormBase Gene ID /WP=CE19944 /TR=Q9TZM7 /GB=AAC67408.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 30.8
(-2)
A 		19.5
(-3)
A 		31.7
(-1.9)
A 		87
(3)
A 		68
B 52.8
(-0.3)
A 		73.8
(3)
A 		69.5
(2.3)
A 		35.8
(-3)
A 		38
C 31
(-2.1)
A 		34.5
(-1.8)
A 		18.7
(-3)
A 		96.9
(3)
A 		78
avr 38.2
(-3) 		42.6
(-2.2) 		40
(-2.7) 		73.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 22
(-3)
A 		54.8
(0.5)
A 		61.5
(1.3)
A 		50
(0)
A 		24.4
(-2.7)
A 		77.6
(3)
A 		56
B 64.3
(2.8)
A 		43.9
(-2.4)
A 		65.1
(3)
A 		41.6
(-3)
A 		58.8
(1.4)
A 		51.1
(-0.6)
A 		24
C 75.8
(3)
A 		69.2
(2.5)
A 		23.7
(-1.3)
A 		58.6
(1.6)
A 		2.8
(-3)
A 		43.5
(0.3)
A 		73
avr 54
(2.3) 		56
(2.7) 		50.1
(1.5) 		50.1
(1.5) 		28.7
(-3) 		57.4
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.2
(1.9)
A 		4.2
(-3)
A 		8.3
(-0.1)
A 		12.7
(3)
A 		9
B 16.9
(2.3)
A 		18.2
(3)
A 		16.1
(1.8)
A 		7.6
(-3)
A 		11
C 10.3
(-0.7)
A 		9.9
(-0.9)
A 		6.5
(-3)
A 		16.3
(3)
A 		10
avr 12.8
(3) 		10.8
(-1.8) 		10.3
(-3) 		12.2
(1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.1
(-3)
A 		19.5
(3)
A 		13.4
(0.6)
A 		12.7
(0.4)
A 		7.4
(-1.7)
A 		18.9
(2.8)
A 		15
B 22.4
(2.3)
A 		14.6
(-1.3)
A 		15.8
(-0.8)
A 		11
(-3)
A 		23.9
(3)
A 		19
(0.7)
A 		13
C 28.1
(3)
A 		21.1
(1.5)
A 		6
(-1.9)
A 		11.8
(-0.6)
A 		0.9
(-3)
A 		14.6
(0)
A 		27
avr 18.2
(2.8) 		18.4
(3) 		11.7
(-2.2) 		11.8
(-2.1) 		10.7
(-3) 		17.5
(2.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17055
Sequence Type Exemplar sequence
Representative Public ID H35N09.2 NCBI
Target Description H35N09.2 /REP_DB=WormBase Gene ID /WP=CE19944 /TR=Q9TZM7 /GB=AAC67408.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077058 NCBI Caenorhabditis elegans H35N09.2 (H35N09.2) mRNA, complete cds. 11/11 None
H35N09.2 ENSEMBL cdna:known chromosome:CEL140:X:8603461:8606159:-1 gene:H35N09.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000029008 5/11 Cross Hyb Matching Probes None
SNAP00000029006 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8603459-8606158(-) 98.98 100.0
Public Domain and Genome References
Gene Title
Ensembl H35N09.2
Entrez Gene 186802 Entrez gene
SwissProt Q9TZM7 EMBL-EBI
WormBase CE19944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67408 Hypothetical protein H35N09.2 [Caenorhabditis elegans] ref|NP_509459.1| H35N09.2 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509459.1 2 93-115,311-333
H35N09.2 2 93-115,311-333
Sequence
Target Sequence 
>C. ELEGANS:184805_AT
cacaactctcaaatcggaactctcggcgaagcatcggaacacagaatagggatcatcgag
gaaactccggaaggaaggtcgttctcgcttcgggttctcagataagacgccaatcaaaac
gacagtcggccgcgagacaatcagtggaatcaacaaatgtgccaccgaacgtagcagtta
tcagaagacatatcaaattacatgtcgagattttcaccaaaaagagtccaagcagtggaa
caacggaagtgtgggttccagctgctcagctcgaaaaagtaaaaaagttctgggcgaaca
aggctgttgatggccgccggattaagctgaagatcgagatcaaaccaggggtcccgctca
agtcccgcgttacagtgttctccaagttttccaagaccatgcaatattttctattgttcc
ccgtgttaattagtttttccccgtttattgtttattgccgctttacaatttccagatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAACTCTCAAATCGGAACTCTCG 419 193 539 Antisense
GGAACTCTCGGCGAAGCATCGGAAC 442 529 554 Antisense
TCCGGAAGGAAGGTCGTTCTCGCTT 422 591 604 Antisense
TCTCGCTTCGGGTTCTCAGATAAGA 204 611 621 Antisense
ACAGTCGGCCGCGAGACAATCAGTG 529 107 660 Antisense
GAACAAGGCTGTTGATGGCCGCCGG 286 353 834 Antisense
GATGGCCGCCGGATTAAGCTGAAGA 240 407 847 Antisense
GCGTTACAGTGTTCTCCAAGTTTTC 534 291 905 Antisense
TTCTATTGTTCCCCGTGTTAATTAG 38 689 947 Antisense
TCCCCGTTTATTGTTTATTGCCGCT 23 589 976 Antisense
TGCCGCTTTACAATTTCCAGATATC 316 585 994 Antisense
Sequence Source Affymetrix Proprietary Database