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[184804_at]

Description Y54G11A.4 /REP_DB=WormBase Gene ID /WP=CE22475 /TR=Q9XW02 /GB=CAA22449.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 60      6grp_total > 14      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 484.2
(3)
P 		466.2
(2.5)
P 		274.9
(-2.5)
P 		257.8
(-3)
P 		226
B 557.6
(3)
P 		335.8
(-1.1)
P 		234
(-3)
P 		242.3
(-2.8)
P 		324
C 415.5
(3)
P 		265.9
(-1.1)
P 		194.2
(-3)
P 		351.9
(1.3)
P 		221
avr 485.8
(3) 		356
(-0.1) 		234.4
(-3) 		284
(-1.8) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 678
1 2 3 4 5 6 range
A 817.9
(3)
P 		403.2
(-0.8)
P 		307.7
(-1.6)
P 		272
(-1.9)
P 		157
(-3)
P 		154.6
(-3)
P 		663
B 675.7
(3)
P 		447.5
(0.2)
P 		353.2
(-1)
P 		319.9
(-1.4)
P 		192.8
(-3)
P 		206.5
(-2.8)
P 		483
C 475.7
(2.8)
P 		488.7
(3)
P 		361.6
(0.8)
P 		298.3
(-0.3)
P 		139.5
(-3)
P 		185.2
(-2.2)
P 		349
avr 656.4
(3) 		446.5
(0.4) 		340.8
(-0.8) 		296.7
(-1.4) 		163.1
(-3) 		182.1
(-2.8) 		493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 176.3
(3)
P 		101.2
(-0.3)
P 		71.9
(-1.5)
P 		37.7
(-3)
P 		139
B 177.8
(3)
P 		82.9
(-1.5)
P 		54.2
(-2.9)
P 		51.6
(-3)
P 		126
C 137.5
(3)
P 		76.4
(-1.7)
P 		67.7
(-2.4)
P 		59.3
(-3)
P 		78
avr 163.9
(3) 		86.8
(-1) 		64.6
(-2.2) 		49.5
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 150.8
(3)
P 		143.4
(2.6)
P 		67
(-1.4)
P 		69
(-1.3)
P 		47.4
(-2.5)
P 		37.6
(-3)
P 		113
B 235.1
(3)
P 		149
(-0.3)
P 		85.8
(-2.7)
P 		84.7
(-2.7)
P 		78.3
(-3)
P 		77
(-3)
P 		158
C 176.3
(3)
P 		149.1
(1.8)
P 		92
(-0.9)
P 		60
(-2.3)
P 		45.1
(-3)
P 		62
(-2.2)
P 		131
avr 187.4
(3) 		147.2
(1.2) 		81.6
(-1.9) 		71.2
(-2.3) 		56.9
(-3) 		58.9
(-2.9) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2712
Sequence Type Exemplar sequence
Representative Public ID Y54G11A.4 NCBI
Target Description Y54G11A.4 /REP_DB=WormBase Gene ID /WP=CE22475 /TR=Q9XW02 /GB=CAA22449.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064574 NCBI Caenorhabditis elegans Y54G11A.4 (Y54G11A.4) mRNA, complete cds. 11/11 None
GENEFINDER00000023685 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14292714:14295863:1 11/11 None
Y54G11A.4 ENSEMBL cdna:known chromosome:CEL140:II:14292714:14295863:1 gene:Y54G11A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023648 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14292710-14295860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y54G11A.4
Entrez Gene 190295 Entrez gene
SwissProt Q9XW02 EMBL-EBI
WormBase CE22475 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22449 Hypothetical protein Y54G11A.4 [Caenorhabditis elegans] ref|NP_496975.1| Y54G11A.4 [Caenorhabditis elegans] 0.0
blast CAA22450 Hypothetical protein Y54G11A.7 [Caenorhabditis elegans] ref|NP_496976.2| Y54G11A.7 [Caenorhabditis elegans] 0.0
blast CAE73371 Hypothetical protein CBG20808 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184804_AT
attcatcggtgatcactcttctgttagtaatgatgtacaaataggaattgcaacttatat
gcaagaggatttggagacagagaagaaattgagagattcgttggtgaagtattcagagct
tctcaccgaggacaacgcgcaaattagcaagaccaccggtgtgccgctctacgacggaat
gctcaactttgctcgtcgcgactacgacacagcagccgatactatgtacccaatcaggga
caaaatcgtccagatcggtggatctaattctcagcgggatctttttgtgcagacactgat
acagtcttgcattttgagcaaggatcccaaaaattggggattgacacctgagctgctggc
ggagaggaatgccttgcatcataactcgttggtgggactgcgacttgctgataagtttag
aaatttgcatccgttccgacattttacggggaaatttcgactggcatcacagttgtattg
tgctgcttttaacgaccctggagacgtcggttgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCATCGGTGATCACTCTTCTGTT 643 11 957 Antisense
TTCAGAGCTTCTCACCGAGGACAAC 7 685 1068 Antisense
GCCGCTCTACGACGGAATGCTCAAC 371 285 1119 Antisense
AGCAGCCGATACTATGTACCCAATC 251 77 1167 Antisense
TCGGTGGATCTAATTCTCAGCGGGA 573 605 1211 Antisense
ACACCTGAGCTGCTGGCGGAGAGGA 524 109 1300 Antisense
TGCCTTGCATCATAACTCGTTGGTG 165 583 1326 Antisense
TTGGTGGGACTGCGACTTGCTGATA 430 707 1345 Antisense
TTTGCATCCGTTCCGACATTTTACG 612 665 1380 Antisense
TATTGTGCTGCTTTTAACGACCCTG 70 665 1432 Antisense
ACGACCCTGGAGACGTCGGTTGCTT 509 1 1448 Antisense
Sequence Source Affymetrix Proprietary Database