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[184802_at]

Description F35G12.12 /REP_DB=WormBase Gene ID /WP=CE20752 /TR=Q20058 /GB=CAA86334.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 63      6grp_total > 60      4grp_total > 47      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 583.7
(3)
P 		463.4
(-1.8)
P 		434
(-3)
P 		510.5
(0.1)
P 		150
B 550.2
(3)
P 		488.9
(-1.7)
P 		471.7
(-3)
P 		517.9
(0.5)
P 		79
C 587.8
(3)
P 		431
(-2)
P 		546.8
(1.7)
P 		400.7
(-3)
P 		187
avr 573.9
(3) 		461.1
(-3) 		484.2
(-1.8) 		476.4
(-2.2) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 459.8
(-3)
P 		552.3
(-1)
P 		687.1
(2)
P 		731.9
(3)
P 		538.8
(-1.3)
P 		662.8
(1.5)
P 		272
B 585.7
(-0.8)
P 		589.9
(-0.7)
P 		749.1
(3)
P 		561.2
(-1.3)
P 		489.7
(-3)
P 		566.9
(-1.2)
P 		259
C 625
(-0.1)
P 		576.9
(-0.8)
P 		583.3
(-0.7)
P 		834.1
(3)
P 		428.8
(-3)
P 		625.4
(-0.1)
P 		405
avr 556.8
(-1.1) 		573
(-0.7) 		673.2
(2) 		709.1
(3) 		485.8
(-3) 		618.4
(0.6) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 212.5
(3)
P 		100.6
(-1.9)
P 		113.4
(-1.3)
P 		74.7
(-3)
P 		138
B 175.4
(3)
P 		120.7
(-2)
P 		109.3
(-3)
P 		110.4
(-2.9)
P 		66
C 194.6
(3)
P 		123.9
(-0.3)
P 		190.6
(2.8)
P 		67.6
(-3)
P 		127
avr 194.2
(3) 		115.1
(-1.3) 		137.8
(-0.1) 		84.2
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 84.8
(-3)
P 		196.4
(3)
P 		149.6
(0.5)
P 		185.6
(2.4)
P 		162.6
(1.2)
P 		161.4
(1.1)
P 		112
B 203.8
(2.3)
P 		196.3
(1.6)
P 		181.9
(0.2)
P 		148.6
(-3)
P 		199
(1.8)
P 		211.4
(3)
P 		63
C 231.7
(3)
P 		176
(-0.6)
P 		148.5
(-2.4)
P 		167.7
(-1.1)
P 		138.7
(-3)
P 		209.3
(1.6)
P 		93
avr 173.4
(-0.6) 		189.6
(2.2) 		160
(-3) 		167.3
(-1.7) 		166.8
(-1.8) 		194
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7460
Sequence Type Exemplar sequence
Representative Public ID F35G12.12 NCBI
Target Description F35G12.12 /REP_DB=WormBase Gene ID /WP=CE20752 /TR=Q20058 /GB=CAA86334.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065531(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065531 NCBI Caenorhabditis elegans F35G12.12 (F35G12.12) mRNA, complete cds. 9/11 A 
SNAP00000042239 ENSEMBL cdna:SNAP chromosome:CEL140:III:4581760:4583705:1 9/11 None
GENEFINDER00000042253 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4581760:4583705:1 9/11 None
F35G12.12.1 ENSEMBL cdna:known chromosome:CEL140:III:4581758:4583850:1 gene:F35G12.12 9/11 None
F35G12.12.2 ENSEMBL cdna:known chromosome:CEL140:III:4581760:4583850:1 gene:F35G12.12 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4581759-4583705(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35G12.12
Entrez Gene 175601 Entrez gene
SwissProt Q20058 EMBL-EBI
WormBase CE31499 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86334 Hypothetical protein F35G12.12 [Caenorhabditis elegans] ref|NP_497932.2| F35G12.12 [Caenorhabditis elegans] 0.0
blast CAE71180 Hypothetical protein CBG18037 [Caenorhabditis briggsae] 1.0E-173
Sequence
Target Sequence 
>C. ELEGANS:184802_AT
tgagaatactttgggagctgctggtgctgcatgtacgatgggaacaatggaattgaagtg
tcgaactcttcaggccgtcactctccttttccagaatacgactgaaaaaattgctgaaac
atggtacgagcgtctcggtggaaaagcattgacacatgtagcagttggaaatgttaagaa
gccgttccctgagatgaagaattgtatttatgatttctggcaacagttgttcacatatcc
atcagttgttcatcagttcatcactttccaggggtatgttaacgacatttttatgcgaga
ttttttattaaaattgttttttctcagattcattgactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAATACTTTGGGAGCTGCTGGT 518 567 1056 Antisense
AGCTGCTGGTGCTGCATGTACGATG 494 81 1071 Antisense
TGAAGTGTCGAACTCTTCAGGCCGT 474 571 1109 Antisense
AACATGGTACGAGCGTCTCGGTGGA 586 131 1173 Antisense
GAAGCCGTTCCCTGAGATGAAGAAT 532 343 1233 Antisense
GTATTTATGATTTCTGGCAACAGTT 93 453 1259 Antisense
GGCAACAGTTGTTCACATATCCATC 449 535 1274 Antisense
TTCACATATCCATCAGTTGTTCATC 49 687 1285 Antisense
GTTGTTCATCAGTTCATCACTTTCC 694 437 1300 Antisense
GTTCATCACTTTCCAGGGGTATGTT 560 443 1311 Antisense
GTTTTTTCTCAGATTCATTGACTGG 415 449 1371 Antisense
Sequence Source Affymetrix Proprietary Database