[Home] | [Total List]

[184801_at]

Description F01F1.10 /REP_DB=WormBase Gene ID /WP=CE01223 /TR=Q19089 /GB=AAC46644.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 418.1
(-0.6)
P 		374
(-1.7)
P 		323.4
(-3)
P 		564.8
(3)
P 		241
B 423.2
(-1.2)
P 		388.7
(-2.3)
P 		368.1
(-3)
P 		556.4
(3)
P 		188
C 476.2
(1.4)
P 		317.9
(-3)
P 		406.9
(-0.5)
P 		535.5
(3)
P 		218
avr 439.2
(-0.5) 		360.2
(-3) 		366.1
(-2.8) 		552.2
(3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 562
(0.4)
P 		362
(-3)
P 		614.6
(1.3)
P 		714
(3)
P 		538.6
(0)
P 		553.5
(0.3)
P 		352
B 357.3
(-3)
P 		392.7
(-2.2)
P 		493.4
(-0.1)
P 		575.1
(1.6)
P 		507.8
(0.2)
P 		640.3
(3)
P 		283
C 300.6
(-3)
P 		406.9
(-1.5)
P 		571.3
(0.9)
P 		551.1
(0.6)
P 		420.8
(-1.3)
P 		717
(3)
P 		416
avr 406.6
(-2.5) 		387.2
(-3) 		559.8
(1.1) 		613.4
(2.4) 		489.1
(-0.6) 		636.9
(3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 152.2
(3)
P 		81.2
(-3)
P 		84.5
(-2.7)
P 		82.7
(-2.9)
P 		71
B 134.9
(3)
P 		96
(-1.7)
P 		85.3
(-3)
P 		118.6
(1)
P 		50
C 157.6
(3)
P 		91.4
(-2.9)
P 		141.8
(1.6)
P 		90.3
(-3)
P 		67
avr 148.2
(3) 		89.5
(-3) 		103.9
(-1.5) 		97.2
(-2.2) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 103.6
(-3)
P 		128.7
(-1.1)
P 		133.9
(-0.7)
P 		181.1
(3)
P 		162.5
(1.6)
P 		134.7
(-0.6)
P 		78
B 124.3
(-2.8)
P 		130.7
(-2.5)
P 		119.8
(-3)
P 		152.3
(-1.4)
P 		206.3
(1.4)
P 		238.8
(3)
P 		119
C 111.4
(-3)
P 		124.1
(-2.4)
P 		145.4
(-1.4)
P 		110.8
(-3)
P 		136.2
(-1.8)
P 		240
(3)
P 		129
avr 113.1
(-3) 		127.8
(-2) 		133
(-1.7) 		148.1
(-0.7) 		168.3
(0.6) 		204.5
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6086
Sequence Type Exemplar sequence
Representative Public ID F01F1.10 NCBI
Target Description F01F1.10 /REP_DB=WormBase Gene ID /WP=CE01223 /TR=Q19089 /GB=AAC46644.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065866(10), NM_001026067(11), NM_001026068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065866 NCBI Caenorhabditis elegans F01F1.10a (F01F1.10) mRNA, complete cds. 10/11 None
NM_001026067 NCBI Caenorhabditis elegans F01F1.10b (F01F1.10) mRNA, complete cds. 11/11 None
NM_001026068 NCBI Caenorhabditis elegans F01F1.10c (F01F1.10) mRNA, complete cds. 11/11 None
SNAP00000009923 ENSEMBL cdna:SNAP chromosome:CEL140:III:5866490:5868449:-1 11/11 None
GENEFINDER00000009936 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5866490:5868449:-1 11/11 None
F01F1.10b ENSEMBL cdna:known chromosome:CEL140:III:5866449:5868449:-1 gene:F01F1.10 11/11 None
F01F1.10a ENSEMBL cdna:known chromosome:CEL140:III:5866449:5868449:-1 gene:F01F1.10 10/11 None
F01F1.10c ENSEMBL cdna:known chromosome:CEL140:III:5866490:5868449:-1 gene:F01F1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5866488-5868019(-) 100.0 100.0
Public Domain and Genome References
Ensembl F01F1.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84828 Hypothetical protein F01F1.10b [Caenorhabditis elegans] ref|NP_001021238.1| F01F1.10b [Caenorhabditis elegans] dbj|BAB84821.1| endo-beta-N-acetylglucosaminidase [Caenorhabditis elegans] 0.0
blast AAU05578 Hypothetical protein F01F1.10c [Caenorhabditis elegans] ref|NP_001021239.1| F01F1.10c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005201 EMBL-EBI Glycoside hydrolase, family 85 1.4E-71
Pfam IPR005201 EMBL-EBI Glycoside hydrolase, family 85 1.1E-73
Pfam IPR005201 EMBL-EBI Glycoside hydrolase, family 85 1.1E-73
Pfam IPR005201 EMBL-EBI Glycoside hydrolase, family 85 1.1E-73
Sequence
Target Sequence 
>C. ELEGANS:184801_AT
ttcacatgtcagttgctctttttgcacccggatggatttatgaaaagtttcctgaggaaa
atcaaatttgcaaaggaattcacttctggtccaaacttcttccacacatccgaactcgtc
ctctaacttctataaactttggcaccaacttctgtactggaatggatcaaaattggcact
accgcctgagcacagtgcagcttcagcctcaaattttaagctccttctgccaccaagtaa
ttgactctacaggactcactctttttggcagaaatcgaaaatttctactattcactttcg
attctgtcaactacagtaccctgaccataacttgcactacttccaattcaattgacctgc
ttctgaatagatctgaaattatggacaaaaccggagattccacgtggcatattgacaagc
caggaaatttggaatccatcagcatcttgacatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACATGTCAGTTGCTCTTTTTGC 436 685 677 Antisense
TCACTTCTGGTCCAAACTTCTTCCA 353 627 756 Antisense
ACTCGTCCTCTAACTTCTATAAACT 529 99 790 Antisense
CTTTGGCACCAACTTCTGTACTGGA 457 223 813 Antisense
CAAAATTGGCACTACCGCCTGAGCA 616 189 844 Antisense
CACAGTGCAGCTTCAGCCTCAAATT 126 197 867 Antisense
TCAAATTTTAAGCTCCTTCTGCCAC 217 629 885 Antisense
TCTACAGGACTCACTCTTTTTGGCA 521 613 922 Antisense
ATTCACTTTCGATTCTGTCAACTAC 79 13 966 Antisense
TACAGTACCCTGACCATAACTTGCA 91 645 988 Antisense
GGAATCCATCAGCATCTTGACATCA 485 531 1107 Antisense
Sequence Source Affymetrix Proprietary Database