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[184800_at]

Description K12D9.12 /REP_DB=WormBase Gene ID /WP=CE12202 /TR=P91388 /GB=AAG24169.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 6
(-3)
A 		30.7
(-1)
A 		70.8
(2.2)
A 		80.5
(3)
A 		75
B 9.4
(-3)
A 		16
(-1.7)
A 		38.2
(2.6)
A 		40.2
(3)
A 		31
C 13.7
(3)
A 		11.2
(0.7)
A 		7.1
(-3)
A 		7.6
(-2.5)
A 		7
avr 9.7
(-3) 		19.3
(-1.3) 		38.7
(2.3) 		42.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 23.8
(1.2)
A 		32.6
(3)
A 		15.6
(-0.4)
A 		2.8
(-3)
A 		3.3
(-2.9)
A 		14.5
(-0.6)
A 		30
B 12
(3)
A 		10
(1.6)
A 		9.2
(1)
A 		9.1
(1)
A 		3.4
(-3)
A 		6.5
(-0.8)
A 		9
C 2.3
(-3)
A 		41.5
(2.8)
A 		6.1
(-2.4)
A 		9
(-2)
A 		26.6
(0.6)
A 		43.1
(3)
A 		41
avr 12.7
(-1.4) 		28
(3) 		10.3
(-2.1) 		7
(-3) 		11.1
(-1.8) 		21.4
(1.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.2
(-3)
A 		6.7
(-1.3)
A 		18.5
(3)
A 		11.8
(0.5)
A 		16
B 3
(-3)
A 		3.9
(-2.1)
A 		8.9
(3)
A 		8.6
(2.7)
A 		6
C 4.5
(3)
A 		3.2
(0.6)
A 		2.5
(-0.8)
A 		1.3
(-3)
A 		3
avr 3.2
(-3) 		4.6
(-1.8) 		10
(3) 		7.2
(0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.4
(-1)
A 		11.6
(3)
A 		3.4
(-1.5)
A 		0.7
(-3)
A 		1
(-2.8)
A 		3.5
(-1.5)
A 		11
B 4.2
(3)
A 		3.3
(1.1)
A 		2.2
(-1.3)
A 		2.4
(-0.9)
A 		1.4
(-3)
A 		2.4
(-0.9)
A 		3
C 0.9
(-3)
A 		12.7
(2.2)
A 		1.6
(-2.7)
A 		1.8
(-2.6)
A 		8.6
(0.4)
A 		14.4
(3)
A 		14
avr 3.2
(-1.7) 		9.2
(3) 		2.4
(-2.4) 		1.6
(-3) 		3.7
(-1.3) 		6.8
(1.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15603
Sequence Type Exemplar sequence
Representative Public ID K12D9.12 NCBI
Target Description K12D9.12 /REP_DB=WormBase Gene ID /WP=CE12202 /TR=P91388 /GB=AAG24169.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071423 NCBI Caenorhabditis elegans K12D9.12 (K12D9.12) mRNA, complete cds. 11/11 None
GENEFINDER00000022485 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3018188:3022840:-1 10/11 None
K12D9.12 ENSEMBL cdna:known chromosome:CEL140:V:3018188:3023893:-1 gene:K12D9.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022483 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3018187-3023893(-) 99.72 100.0
Public Domain and Genome References
Gene Title
Ensembl K12D9.12
Entrez Gene 187333 Entrez gene
SwissProt P91388 EMBL-EBI
WormBase CE12202 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24169 Hypothetical protein K12D9.12 [Caenorhabditis elegans] ref|NP_503824.1| K12D9.12 [Caenorhabditis elegans] 0.0
blast AAB65881 Hypothetical protein F59D6.6 [Caenorhabditis elegans] ref|NP_503829.1| F59D6.6 [Caenorhabditis elegans] 1.0E-111
blast CAE58128 Hypothetical protein CBG01216 [Caenorhabditis briggsae] 1.0E-107
blast AAB65881 Hypothetical protein F59D6.6 [Caenorhabditis elegans] ref|NP_503829.1| F59D6.6 [Caenorhabditis elegans] 1.0E-104
blast CAC35854 Hypothetical protein ZC482.2 [Caenorhabditis elegans] emb|CAB07716.2| Hypothetical protein ZC482.2 [Caenorhabditis elegans] ref|NP_499656.1| ZC482.2 [Caenorhabditis elegans] 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-4
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.8E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.1E-14
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.8E-19
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-16
Sequence
Target Sequence 
>C. ELEGANS:184800_AT
tgcatccagatttttgcctaaccctccccgagttgaacaatttcttcctacagtctgatc
tttctgtggagaatctagacgcaaaattatgcgaggactatggaaatctagaagatatag
ttttatgcattttcatctcaatggaggagctcccgaataattgtgaaataataatgggga
atttgattatagaaggtggagatgaggactatgtgacgaagcttagagtgttagaatttt
tattcggctccctgattattcaaaatacaactttggatagcatcggttttctggattcgc
tacactatattacagtattaaatgagtcatccccagttgcaatgataatctcgaatccaa
atttgaaatacgcgaaaatgagcggaatttgggtagacttgctcatcgcctatatagagt
atagatcaaatttgacttatactggaagtaattgcggcaaaagagttgagctacaactag
aagatatacaatctggagcacaacaccatctgggagcctgtgtagttttaatatggacct
tggcatgttacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATCCAGATTTTTGCCTAACCCT 290 579 1925 Antisense
TCCCCGAGTTGAACAATTTCTTCCT 278 597 1949 Antisense
CAATTTCTTCCTACAGTCTGATCTT 367 181 1962 Antisense
GGAGGAGCTCCCGAATAATTGTGAA 581 515 2067 Antisense
TTTATTCGGCTCCCTGATTATTCAA 706 665 2163 Antisense
GATAGCATCGGTTTTCTGGATTCGC 9 425 2200 Antisense
TCTGGATTCGCTACACTATATTACA 100 607 2214 Antisense
TAAATGAGTCATCCCCAGTTGCAAT 349 639 2243 Antisense
AATTTGGGTAGACTTGCTCATCGCC 562 173 2310 Antisense
TGGAGCACAACACCATCTGGGAGCC 81 549 2418 Antisense
AATATGGACCTTGGCATGTTACTTT 434 173 2454 Antisense
Sequence Source Affymetrix Proprietary Database