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[184798_at]

Description F45C12.3 /REP_DB=WormBase Gene ID /WP=CE10440 /TR=O16747 /GB=AAB66203.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.9
(-3)
A 		4.3
(-0.4)
A 		6.1
(3)
A 		4.9
(0.8)
A 		3
B 3.8
(-2.9)
A 		12.4
(3)
A 		10.6
(1.8)
A 		3.7
(-3)
A 		9
C 8.8
(0.8)
A 		8.7
(0.7)
A 		2.6
(-3)
A 		12.4
(3)
A 		10
avr 5.2
(-3) 		8.5
(3) 		6.4
(-0.8) 		7
(0.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 10.6
(2.7)
A 		6.8
(0)
A 		11.1
(3)
A 		2.4
(-3)
A 		3.2
(-2.4)
A 		4.7
(-1.4)
A 		9
B 3.7
(0)
A 		5
(3)
A 		2.4
(-3)
A 		4.8
(2.5)
A 		4.5
(1.8)
A 		4.9
(2.8)
A 		3
C 4.1
(-1.6)
A 		11.1
(3)
A 		6.3
(-0.2)
A 		2.9
(-2.4)
A 		5.4
(-0.8)
A 		2
(-3)
A 		9
avr 6.1
(0.9) 		7.6
(3) 		6.6
(1.6) 		3.4
(-3) 		4.4
(-1.6) 		3.9
(-2.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.1
(-0.3)
A 		0.9
(-1.7)
A 		1.6
(3)
A 		0.7
(-3)
A 		1
B 1.2
(-2)
A 		3.1
(3)
A 		2.4
(1.2)
A 		0.8
(-3)
A 		2
C 2.9
(3)
A 		2.5
(1.8)
A 		0.9
(-3)
A 		2.1
(0.6)
A 		2
avr 1.7
(-0) 		2.2
(3) 		1.6
(-0.6) 		1.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2
(1.7)
A 		2.4
(3)
A 		2.4
(3)
A 		0.6
(-3)
A 		1
(-1.7)
A 		1.1
(-1.3)
A 		2
B 1.3
(0.5)
A 		1.7
(2.5)
A 		0.6
(-3)
A 		1.3
(0.5)
A 		1.8
(3)
A 		1.8
(3)
A 		1
C 1.5
(-1.1)
A 		3.4
(3)
A 		1.6
(-0.9)
A 		0.6
(-3)
A 		1.7
(-0.6)
A 		0.7
(-2.8)
A 		3
avr 1.6
(-0.2) 		2.5
(3) 		1.5
(-0.5) 		0.8
(-3) 		1.5
(-0.5) 		1.2
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5359
Sequence Type Exemplar sequence
Representative Public ID F45C12.3 NCBI
Target Description F45C12.3 /REP_DB=WormBase Gene ID /WP=CE10440 /TR=O16747 /GB=AAB66203.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061659 NCBI Caenorhabditis elegans F45C12.3 (F45C12.3) mRNA, complete cds. 11/11 None
SNAP00000033195 ENSEMBL cdna:SNAP chromosome:CEL140:II:1730406:1731967:1 11/11 None
GENEFINDER00000033203 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1730406:1731967:1 11/11 None
F45C12.3 ENSEMBL cdna:known chromosome:CEL140:II:1730406:1731967:1 gene:F45C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1730404-1731966(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.3
Entrez Gene 185767 Entrez gene
SwissProt O16747 EMBL-EBI
WormBase CE10440 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66203 Hypothetical protein F45C12.3 [Caenorhabditis elegans] ref|NP_494060.1| F45C12.3 [Caenorhabditis elegans] 0.0
blast CAD21337 conserved hypothetical protein [Neurospora crassa] ref|XP_326598.1| predicted protein [Neurospora crassa] gb|EAA32481.1| predicted protein [Neurospora crassa] 7.0E-16
blast CAD21337 conserved hypothetical protein [Neurospora crassa] ref|XP_326598.1| predicted protein [Neurospora crassa] gb|EAA32481.1| predicted protein [Neurospora crassa] 8.0E-16
blast AAS39897 collagen adhesin domain protein [Bacillus cereus ATCC 10987] ref|NP_977289.1| collagen adhesin domain protein [Bacillus cereus ATCC 10987] 7.0E-14
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.0
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 2.90000009536743
Sequence
Target Sequence 
>C. ELEGANS:184798_AT
gcggaaatcctggagaagcccaacgaacctatggaatcagaaacgctagagaggcaccaa
cagctggaaaagaacgaggagcctagagagtatgaagaggacaagaagctcaaagaacct
ggagagcacgaagaaacggaaaagcttgaaaagcccaataagcttgaaaattccaaaaag
ttcatggagcttgaaacgcaggacgacaatgagaagttcgaggagactaaagaaatcaag
acgcccatggagccagtgaagcttgaggagacggaaaaactggagaagcccagtgagctc
aaggagttcaacgagcttgcgcaactaaatgagctcaaagtgctgtcacaacccaaacgg
tctgagaagcccgaaaagcccaatgagtatgaaaggtccaagaatctagatgatggttcc
attaagcttgaggagcatgaggatttggaggaagacaaggagctcaaggaatttgtgaac
ccaggaaagttcaatagacccagtgagcttgagcttgaaaaactcggtaagcccgaagag
cctaaggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGAAATCCTGGAGAAGCCCAACG 698 291 823 Antisense
GAAGCCCAACGAACCTATGGAATCA 468 343 837 Antisense
AACGCTAGAGAGGCACCAACAGCTG 545 145 864 Antisense
CATGGAGCTTGAAACGCAGGACGAC 517 207 1005 Antisense
GAAATCAAGACGCCCATGGAGCCAG 425 359 1054 Antisense
GACGCCCATGGAGCCAGTGAAGCTT 185 381 1062 Antisense
GAAGCCCAGTGAGCTCAAGGAGTTC 599 343 1107 Antisense
CTGTCACAACCCAAACGGTCTGAGA 8 241 1165 Antisense
GGTCTGAGAAGCCCGAAAAGCCCAA 374 501 1181 Antisense
AATAGACCCAGTGAGCTTGAGCTTG 641 171 1315 Antisense
GGTAAGCCCGAAGAGCCTAAGGTTG 28 1 1348 Antisense
Sequence Source Affymetrix Proprietary Database