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[184797_at] 7TM chemoreceptor, srw family

Description H06H21.2 /REP_DB=WormBase Gene ID /WP=CE17961 /TR=Q9TXU8 /GB=AAK29844.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 10      6grp_cgc > 90      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 37.6
(-0.7)
A 		19.1
(-3)
A 		19.1
(-3)
A 		67.3
(3)
P 		48
B 21
(-3)
A 		46.3
(0.7)
A 		62.2
(3)
M 		58.7
(2.5)
A 		41
C 30
(0.5)
A 		35.8
(1.7)
A 		13
(-3)
A 		42.2
(3)
P 		29
avr 29.5
(-3) 		33.7
(-2.1) 		31.4
(-2.6) 		56.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 51.2
(3)
P 		14.8
(-3)
A 		50.5
(2.9)
A 		26.4
(-1.1)
A 		32.1
(-0.1)
A 		20.3
(-2.1)
A 		36
B 31.2
(0.6)
A 		28.6
(0.3)
A 		50.3
(3)
P 		2.4
(-3)
A 		38
(1.5)
A 		12.2
(-1.8)
A 		48
C 25.7
(-1.4)
A 		25.1
(-1.5)
A 		53.4
(3)
A 		15.5
(-3)
A 		19.4
(-2.4)
A 		21.5
(-2.1)
A 		38
avr 36
(0.5) 		22.8
(-1.7) 		51.4
(3) 		14.8
(-3) 		29.8
(-0.5) 		18
(-2.5) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 13.7
(3)
A 		4.2
(-3)
A 		5
(-2.5)
A 		9.9
(0.6)
P 		10
B 6.7
(-3)
A 		11.4
(0.7)
A 		14.4
(3)
M 		12.5
(1.5)
A 		8
C 9.9
(2.6)
A 		10.3
(3)
A 		4.5
(-3)
A 		7.1
(-0.3)
P 		6
avr 10.1
(3) 		8.6
(-1.3) 		8
(-3) 		9.8
(2.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.4
(1.4)
P 		5.3
(-2.6)
A 		11
(3)
A 		6.7
(-1.2)
A 		9.7
(1.7)
A 		4.9
(-3)
A 		6
B 10.9
(1.2)
A 		9.5
(0.6)
A 		12.2
(1.7)
P 		0.6
(-3)
A 		15.4
(3)
A 		4.5
(-1.4)
A 		15
C 9.5
(0.7)
A 		7.7
(-0.4)
A 		13.6
(3)
A 		3.1
(-3)
A 		6.3
(-1.2)
A 		7.2
(-0.7)
A 		11
avr 9.9
(1.4) 		7.5
(-0.3) 		12.3
(3) 		3.5
(-3) 		10.5
(1.8) 		5.5
(-1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10936
Sequence Type Exemplar sequence
Representative Public ID H06H21.2 NCBI
Target Description H06H21.2 /REP_DB=WormBase Gene ID /WP=CE17961 /TR=Q9TXU8 /GB=AAK29844.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068250(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068250 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-95) (srw-95) mRNA, complete cds. 10/11 None
SNAP00000018255 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4810926:4813954:1 10/11 None
GENEFINDER00000018264 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4812744:4817306:1 10/11 None
H06H21.2 ENSEMBL cdna:known chromosome:CEL140:IV:4812119:4814019:1 gene:H06H21.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4812046-4814025(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-95
Ensembl H06H21.2
Entrez Gene 186699 Entrez gene
SwissProt Q9TXU8 EMBL-EBI
WormBase CE34045 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29844 Serpentine receptor, class w protein 95 [Caenorhabditis elegans] ref|NP_500651.2| Serpentine Receptor, class W family member (srw-95) [Caenorhabditis elegans] 0.0
blast AAK29843 Serpentine receptor, class w protein 94 [Caenorhabditis elegans] ref|NP_500652.2| Serpentine Receptor, class W family member (srw-94) [Caenorhabditis elegans] 0.0
blast AAK29844 Serpentine receptor, class w protein 95 [Caenorhabditis elegans] ref|NP_500651.2| Serpentine Receptor, class W family member (srw-95) [Caenorhabditis elegans] 1.0E-146
blast AAK29843 Serpentine receptor, class w protein 94 [Caenorhabditis elegans] ref|NP_500652.2| Serpentine Receptor, class W family member (srw-94) [Caenorhabditis elegans] 1.0E-145
blast AAK29844 Serpentine receptor, class w protein 95 [Caenorhabditis elegans] ref|NP_500651.2| Serpentine Receptor, class W family member (srw-95) [Caenorhabditis elegans] 4.0E-75
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 8.0E-73
blast AAK29845 Hypothetical protein H06H21.3 [Caenorhabditis elegans] ref|NP_500650.1| H06H21.3 [Caenorhabditis elegans] 1.0E-70
blast CAE66391 Hypothetical protein CBG11654 [Caenorhabditis briggsae] 9.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001253 EMBL-EBI Eukaryotic initiation factor 1A (eIF-1A) 2.2E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500651.2 7 41-63,70-92,132-151,164-186,236-258,275-297,312-334
H06H21.2 7 41-63,70-92,132-151,164-186,236-258,275-297,312-334
SNAP00000018255 3 247-269,304-326,341-363
GENEFINDER00000018264 10 25-47,97-119,154-176,191-213,306-328,338-360,430-452,502-524,561-583,598-620
Sequence
Target Sequence 
>C. ELEGANS:184797_AT
tgcacatttgcaacgagttatccagaatctcgtgttatcttcactttggtacaatccaaa
gtctaccaggctaacgatggacttgtaggaaaagtatatcaattgattaatggaacaatt
tccaaactgtttccatgttttctgcttccagttctaacctatatgcttattgtcgaactc
aaaaaagccaaggatcaccagagaatgttaaatttaactataagaccagtaattatcaat
gaaacccagtcagttgccagtacagaaagaaccacggggctagtcgtatttataacagct
tctacatttcttattgaagttccaaatggaattgttcgtgttttacaatttggatatact
gacttgggatactggagaatggcaacctccgttgcacaattttcaagtgccttctttgtt
ctacacgcggctcttcaaggcgccatcttctttctgatgtcatcacaatatcggagggca
gtttcaaaaatattcaagaatgatcgaccacccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACATTTGCAACGAGTTATCCAG 530 577 496 Antisense
GAATCTCGTGTTATCTTCACTTTGG 641 327 520 Antisense
AATCCAAAGTCTACCAGGCTAACGA 511 167 548 Antisense
AAACTGTTTCCATGTTTTCTGCTTC 73 127 619 Antisense
TTCTGCTTCCAGTTCTAACCTATAT 284 693 635 Antisense
AACCTATATGCTTATTGTCGAACTC 654 145 651 Antisense
TGAAACCCAGTCAGTTGCCAGTACA 230 571 735 Antisense
TAACAGCTTCTACATTTCTTATTGA 579 639 788 Antisense
CAACCTCCGTTGCACAATTTTCAAG 208 187 878 Antisense
TTTCAAGTGCCTTCTTTGTTCTACA 186 671 896 Antisense
ATTCAAGAATGATCGACCACCCATC 479 11 987 Antisense
Sequence Source Affymetrix Proprietary Database