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[184796_s_at]

Description F20D12.5 /REP_DB=WormBase Gene ID /WP=CE04435 /TR=Q19641 /GB=AAA81673.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 65      6grp_total > 09      4grp_total > 38      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 684
1 2 3 4 range
A 1232.9
(3)
P 		1180.4
(1.5)
P 		1121.2
(-0.2)
P 		1022.6
(-3)
P 		210
B 1412.2
(3)
P 		1079.2
(-3)
P 		1170.3
(-1.4)
P 		1258.8
(0.2)
P 		333
C 1411
(3)
P 		1252.1
(1.6)
P 		727.9
(-3)
P 		1274.6
(1.8)
P 		683
avr 1352
(3) 		1170.6
(-0.2) 		1006.5
(-3) 		1185.3
(0.1) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 816
1 2 3 4 5 6 range
A 1072.7
(-0.3)
P 		1213.5
(0.9)
P 		1143.8
(0.3)
P 		1439.5
(3)
P 		1289.5
(1.6)
P 		779.5
(-3)
P 		660
B 1595.8
(3)
P 		1176.7
(-0.4)
P 		1226.1
(0)
P 		1275.3
(0.4)
P 		1306.8
(0.7)
P 		846.5
(-3)
P 		749
C 1581.4
(3)
P 		1152.7
(-0.3)
P 		916.4
(-2.1)
P 		1389.7
(1.5)
P 		1232.6
(0.3)
P 		792.2
(-3)
P 		789
avr 1416.6
(3) 		1181
(0.7) 		1095.4
(-0.2) 		1368.2
(2.5) 		1276.3
(1.6) 		806.1
(-3) 		611
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 317
1 2 3 4 range
A 448.9
(3)
P 		256.2
(-0.9)
P 		293.1
(-0.1)
P 		149.7
(-3)
P 		299
B 450.3
(3)
P 		266.5
(-3)
P 		271.2
(-2.8)
P 		268.2
(-2.9)
P 		184
C 467.1
(3)
P 		360
(0.5)
P 		253.7
(-2.1)
P 		214.9
(-3)
P 		252
avr 455.4
(3) 		294.2
(-1) 		272.7
(-1.5) 		210.9
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 197.7
(-2.8)
P 		431.6
(3)
P 		249.1
(-1.5)
P 		365.1
(1.3)
P 		389.1
(1.9)
P 		189.8
(-3)
P 		242
B 555.2
(3)
P 		391.7
(-0.8)
P 		297.7
(-3)
P 		337.8
(-2.1)
P 		530.9
(2.4)
P 		315.6
(-2.6)
P 		258
C 586.2
(3)
P 		351.7
(-1)
P 		233.2
(-3)
P 		279.5
(-2.2)
P 		398.8
(-0.2)
P 		265.2
(-2.5)
P 		353
avr 446.4
(3) 		391.7
(1.3) 		260
(-2.9) 		327.5
(-0.8) 		439.6
(2.8) 		256.9
(-3) 		190
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184796_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9868
Sequence Type Exemplar sequence
Representative Public ID F20D12.5 NCBI
Target Description F20D12.5 /REP_DB=WormBase Gene ID /WP=CE04435 /TR=Q19641 /GB=AAA81673.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068925 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-291) (tag-291) mRNA, complete cds. 11/11 None
SNAP00000004277 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7939908:7940789:-1 11/11 None
GENEFINDER00000004289 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7939037:7940789:-1 11/11 None
F20D12.5 ENSEMBL cdna:known chromosome:CEL140:IV:7939804:7940801:-1 gene:F20D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7937947-7940795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol exc-9
Ensembl F20D12.5
Entrez Gene 177586 Entrez gene
SwissProt Q19641 EMBL-EBI
WormBase CE29767 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16110 hypothetical protein F20D12.5 - Caenorhabditis elegans 5.0E-51
blast AAL27241 Hypothetical protein F20D12.5 [Caenorhabditis elegans] ref|NP_501326.2| Temporarily Assigned Gene name family member (tag-291) [Caenorhabditis elegans] 4.0E-49
blast T16110 hypothetical protein F20D12.5 - Caenorhabditis elegans 5.0E-49
blast T16110 hypothetical protein F20D12.5 - Caenorhabditis elegans 1.0E-48
blast AAL27241 Hypothetical protein F20D12.5 [Caenorhabditis elegans] ref|NP_501326.2| Temporarily Assigned Gene name family member (tag-291) [Caenorhabditis elegans] 1.0E-48
blast CAE70917 Hypothetical protein CBG17716 [Caenorhabditis briggsae] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 4.5E-14
Sequence
Target Sequence 
>C. ELEGANS:184796_S_AT
gacgttggcagctggaagtcattcggagagagagggcaagccatactgtaaccgatgtta
cggagctttgttcggaccacgtggatacggccacggtggaaccgagtcacacacgtttca
tcaaggacaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTTGGCAGCTGGAAGTCATTCG 584 377 126 Antisense
GAAGTCATTCGGAGAGAGAGGGCAA 357 335 140 Antisense
AGAGGGCAAGCCATACTGTAACCGA 324 67 156 Antisense
GCAAGCCATACTGTAACCGATGTTA 369 321 161 Antisense
GATGTTACGGAGCTTTGTTCGGACC 219 401 179 Antisense
AGCTTTGTTCGGACCACGTGGATAC 555 75 189 Antisense
TGTTCGGACCACGTGGATACGGCCA 334 561 194 Antisense
GATACGGCCACGGTGGAACCGAGTC 78 425 209 Antisense
ACGGTGGAACCGAGTCACACACGTT 186 93 218 Antisense
CCGAGTCACACACGTTTCATCAAGG 102 265 227 Antisense
TCACACACGTTTCATCAAGGACAAA 634 611 232 Antisense
Sequence Source Affymetrix Proprietary Database