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[184795_at]

Description F20D12.5 /REP_DB=WormBase Gene ID /WP=CE04435 /TR=Q19641 /GB=AAA81673.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 22.8
(-1.5)
A 		65.8
(3)
A 		10.7
(-2.7)
A 		8
(-3)
A 		58
B 4.2
(-3)
A 		28.2
(2.4)
A 		30.8
(3)
A 		13
(-1)
A 		27
C 22.8
(-0.9)
A 		38.3
(0.6)
A 		2
(-3)
A 		61.7
(3)
A 		60
avr 16.6
(-2.6) 		44.1
(3) 		14.5
(-3) 		27.6
(-0.3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 7.2
(-0.7)
A 		13.5
(2)
A 		15.8
(3)
A 		1.7
(-3)
A 		9.9
(0.5)
A 		4.1
(-2)
A 		14
B 4.5
(-2.4)
A 		7.4
(-1.8)
A 		30.7
(3)
A 		4.7
(-2.4)
A 		1.8
(-3)
A 		4.1
(-2.5)
A 		29
C 15.3
(-1.7)
A 		59.8
(3)
A 		8
(-2.4)
A 		10.2
(-2.2)
A 		53.2
(2.3)
A 		2.4
(-3)
A 		57
avr 9
(-1.6) 		26.9
(3) 		18.2
(0.8) 		5.5
(-2.5) 		21.6
(1.6) 		3.5
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.3
(0.3)
A 		14.3
(3)
A 		2.8
(-2.3)
A 		1.2
(-3)
A 		13
B 1.3
(-3)
A 		7
(2.9)
A 		7.1
(3)
A 		2.8
(-1.4)
A 		6
C 7.6
(1)
A 		11
(3)
A 		0.7
(-3)
A 		10.4
(2.7)
A 		10
avr 5.7
(-1.2) 		10.8
(3) 		3.5
(-3) 		4.8
(-1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.3
(-1.8)
A 		4.8
(3)
A 		3.4
(1.1)
A 		0.4
(-3)
A 		3
(0.5)
A 		1
(-2.2)
A 		4
B 1.6
(-2.2)
A 		2.5
(-1.4)
A 		7.5
(3)
A 		1.3
(-2.5)
A 		0.7
(-3)
A 		1.5
(-2.3)
A 		7
C 5.7
(-1.3)
A 		18.3
(3)
A 		2
(-2.6)
A 		2.1
(-2.6)
A 		17.2
(2.6)
A 		0.8
(-3)
A 		18
avr 2.9
(-1.5) 		8.5
(3) 		4.3
(-0.4) 		1.3
(-2.8) 		7
(1.8) 		1.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9868
Sequence Type Exemplar sequence
Representative Public ID F20D12.5 NCBI
Target Description F20D12.5 /REP_DB=WormBase Gene ID /WP=CE04435 /TR=Q19641 /GB=AAA81673.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171390(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171390 NCBI Caenorhabditis elegans F20D12.7 (F20D12.7) mRNA, complete cds. 10/11 None
SNAP00000004276 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7937942:7938917:-1 10/11 None
GENEFINDER00000004290 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7937942:7938917:-1 10/11 None
F20D12.7 ENSEMBL cdna:known chromosome:CEL140:IV:7937942:7938917:-1 gene:F20D12.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7937947-7940795(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D12.7
Entrez Gene 260102 Entrez gene
SwissProt Q95QK1 EMBL-EBI
WormBase CE29768 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL27242 Hypothetical protein F20D12.7 [Caenorhabditis elegans] ref|NP_741455.1| F20D12.7 [Caenorhabditis elegans] 1.0E-86
blast T16110 hypothetical protein F20D12.5 - Caenorhabditis elegans 1.0E-86
blast CAE70916 Hypothetical protein CBG17713 [Caenorhabditis briggsae] 1.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741455.1 1 31-53
F20D12.7 1 31-53
SNAP00000004276 1 31-53
GENEFINDER00000004290 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:184795_AT
actggacagcaaaaaatggcacgtaatcaaagaagatatcgtcgtggtggacaagaacag
acttggagagagaaatggacaattttcagacataatagaagaaaagcaagttggcatgaa
ttagtagcttacggaataattttaaacgtattcggtgctgctctgttactcataaaagct
caattggataaagatgtaatcaaagctgcagttgatcaaaaatttcgagatgctggaata
aaagtgaattcaactgatggatcagatgaagaggaagaaataacagaaccaagttctgta
ctattggttatgattacaatgggtggaagaatggctaatgttgtaggaactatgaaatta
tataagggacttggcaaatatttgtcagatcgcaaacgcaaaaaattccagtcaacaacc
gaacgaattcaaaacggggaagctgagacagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGACAGCAAAAAATGGCACGTA 667 95 256 Antisense
GAAGATATCGTCGTGGTGGACAAGA 651 337 287 Antisense
GTTGGCATGAATTAGTAGCTTACGG 159 435 365 Antisense
TAAACGTATTCGGTGCTGCTCTGTT 388 641 398 Antisense
GCTGCTCTGTTACTCATAAAAGCTC 607 297 412 Antisense
AAGTTCTGTACTATTGGTTATGATT 73 157 546 Antisense
GGGTGGAAGAATGGCTAATGTTGTA 633 491 576 Antisense
GGCAAATATTTGTCAGATCGCAAAC 273 535 628 Antisense
GATCGCAAACGCAAAAAATTCCAGT 452 415 643 Antisense
TCCAGTCAACAACCGAACGAATTCA 540 587 662 Antisense
CAAAACGGGGAAGCTGAGACAGAAT 80 189 685 Antisense
Sequence Source Affymetrix Proprietary Database