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[184794_s_at]

Description F40G12.11 /REP_DB=WormBase Gene ID /WP=CE10196 /TR=Q19458 /GB=CAB01191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 2.7
(-3)
A 		3.4
(-2.9)
A 		21.7
(-1.2)
A 		65.2
(3)
A 		63
B 6.8
(3)
A 		3.6
(-3)
A 		5.5
(0.6)
A 		4.2
(-1.9)
A 		3
C 6.3
(-2.8)
A 		3.8
(-2.9)
A 		1.7
(-3)
A 		121.6
(3)
P 		120
avr 5.3
(-2.8) 		3.6
(-3) 		9.6
(-2.4) 		63.7
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 8.7
(-2.4)
A 		2
(-3)
A 		16.9
(-1.7)
A 		6.5
(-2.6)
A 		59.5
(2)
A 		71.1
(3)
M 		69
B 18.7
(-2.3)
A 		5.7
(-2.9)
A 		4
(-3)
A 		24.5
(-2.1)
A 		69.5
(-0)
P 		135.7
(3)
P 		132
C 2.8
(-3)
A 		29.9
(-1.5)
A 		3.3
(-3)
A 		6.2
(-2.8)
A 		53.8
(-0.1)
A 		110
(3)
P 		107
avr 10.1
(-2.9) 		12.5
(-2.7) 		8.1
(-3) 		12.4
(-2.7) 		60.9
(0.2) 		105.6
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 1
(-2.8)
A 		0.7
(-3)
A 		5.7
(0.4)
A 		9.5
(3)
A 		9
B 2.2
(3)
A 		0.9
(-3)
A 		1.3
(-1.2)
A 		0.9
(-3)
A 		1
C 2.1
(-2.5)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		20.5
(3)
P 		20
avr 1.8
(-2.4) 		0.9
(-3) 		2.5
(-2) 		10.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 1.6
(-2.7)
A 		0.7
(-3)
A 		3.7
(-2)
A 		1.7
(-2.7)
A 		17.9
(3)
A 		17.3
(2.8)
M 		17
B 6.5
(-2.3)
A 		1.9
(-2.9)
A 		1
(-3)
A 		6.5
(-2.3)
A 		28.2
(0.3)
P 		50.6
(3)
P 		50
C 1.1
(-3)
A 		9.1
(-1.6)
A 		0.8
(-3)
A 		1.3
(-2.9)
A 		17.4
(-0.2)
A 		36.8
(3)
P 		36
avr 3.1
(-2.8) 		3.9
(-2.6) 		1.8
(-3) 		3.2
(-2.7) 		21.2
(0.5) 		34.9
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 184794_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14235
Sequence Type Exemplar sequence
Representative Public ID F40G12.11 NCBI
Target Description F40G12.11 /REP_DB=WormBase Gene ID /WP=CE10196 /TR=Q19458 /GB=CAB01191.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074137 NCBI Caenorhabditis elegans F40G12.11 (F40G12.11) mRNA, complete cds. 11/11 None
F40G12.11 ENSEMBL cdna:known chromosome:CEL140:V:14288759:14290627:1 gene:F40G12.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017352 8/11 Cross Hyb Matching Probes None
GENEFINDER00000017366 8/11 Cross Hyb Matching Probes None
GENEFINDER00000026760 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14288790-14290416(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40G12.11
Entrez Gene 179928 Entrez gene
SwissProt Q19458 EMBL-EBI
WormBase CE10196 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01191 Hypothetical protein F40G12.11 [Caenorhabditis elegans] emb|CAB01162.1| Hypothetical protein F40G12.11 [Caenorhabditis elegans] ref|NP_506538.1| F40G12.11 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:184794_S_AT
ctggtttccgaaaaatcctgcatagaagagtcacttcgaaactttcgagagttcgcaaaa
gaggatagtaaaactgatacttcttcaaaattggatccgccaaatctgaatactcttttg
taccaattggaagggatagaaaagattatgaacagcattcaaacaacacttgaggcaaat
aatttcaatgattctgaaaatggctcaaatgaagttacgccaaacaaatctcaactggaa
ggtgactcgttgaaagaagttccatcagaagaatctcaaatagtcgattcagcccatgac
ggagattcaaggaaagaaggtgaatcggaggtatcagaaatggacaacgtcgcactggac
aaagatttacccgaagaaactgaaacagataaaactcttgtggacgaaattccgctggaa
gatttggacaaagaaccactggacgaaaatccactcgaagggtctcctgggcctgcacaa
aacatgactgaacggaacatacggaaacgccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGTTTCCGAAAAATCCTGCATAG 97 239 598 Antisense
TACTTCTTCAAAATTGGATCCGCCA 253 645 675 Antisense
GGATCCGCCAAATCTGAATACTCTT 635 511 690 Antisense
GAAGTTACGCCAAACAAATCTCAAC 180 337 808 Antisense
TAGTCGATTCAGCCCATGACGGAGA 126 639 878 Antisense
GAAATGGACAACGTCGCACTGGACA 257 361 934 Antisense
GTCGCACTGGACAAAGATTTACCCG 353 475 946 Antisense
ACTCTTGTGGACGAAATTCCGCTGG 515 95 991 Antisense
AAAATCCACTCGAAGGGTCTCCTGG 611 131 1043 Antisense
TCTCCTGGGCCTGCACAAAACATGA 391 609 1060 Antisense
TGAACGGAACATACGGAAACGCCCA 492 567 1086 Antisense
Sequence Source Affymetrix Proprietary Database