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[184793_at]

Description K12D9.10 /REP_DB=WormBase Gene ID /WP=CE12198 /TR=P91385 /GB=AAG24167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 04      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 34.1
(-2.1)
A 		12.3
(-3)
A 		42.6
(-1.7)
A 		154.1
(3)
P 		142
B 60.6
(0.9)
A 		5.5
(-3)
A 		7.1
(-2.9)
A 		90.6
(3)
P 		85
C 78.3
(-1.7)
P 		47.9
(-2.5)
A 		28.7
(-3)
A 		257.4
(3)
P 		229
avr 57.7
(-1.5) 		21.9
(-3) 		26.1
(-2.8) 		167.4
(3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 7.5
(-3)
A 		15.5
(-2.1)
A 		62.8
(3)
A 		45.7
(1.1)
A 		42.5
(0.8)
A 		21.4
(-1.5)
A 		55
B 20.2
(2.4)
A 		20.2
(2.4)
A 		22.1
(3)
A 		13.6
(0.4)
A 		2.8
(-3)
A 		19.6
(2.2)
A 		19
C 14.2
(-1.6)
A 		26.9
(0.2)
A 		3.7
(-3)
A 		47.6
(3)
A 		11
(-2)
A 		19.9
(-0.8)
A 		44
avr 14
(-3) 		20.9
(-1.1) 		29.5
(1.3) 		35.6
(3) 		18.8
(-1.7) 		20.3
(-1.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 12.4
(-0.1)
A 		2.7
(-3)
A 		11.1
(-0.5)
A 		22.6
(3)
P 		20
B 19.3
(3)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		19.3
(3)
P 		18
C 25.9
(-0.1)
P 		13.8
(-2.3)
A 		10
(-3)
A 		43.4
(3)
P 		33
avr 19.2
(0.5) 		6
(-3) 		7.6
(-2.6) 		28.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-3)
A 		5.5
(-1)
A 		13.7
(3)
A 		11.6
(2)
A 		12.8
(2.6)
A 		5.2
(-1.1)
A 		12
B 7
(2.7)
A 		6.7
(2.4)
A 		5.4
(1.2)
A 		3.6
(-0.6)
A 		1.1
(-3)
A 		7.3
(3)
A 		6
C 5.3
(0)
A 		8.2
(2)
A 		1
(-3)
A 		9.6
(3)
A 		3.5
(-1.3)
A 		6.7
(1)
A 		9
avr 4.6
(-3) 		6.8
(0.6) 		6.7
(0.4) 		8.3
(3) 		5.8
(-1.1) 		6.4
(-0.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15264
Sequence Type Exemplar sequence
Representative Public ID K12D9.10 NCBI
Target Description K12D9.10 /REP_DB=WormBase Gene ID /WP=CE12198 /TR=P91385 /GB=AAG24167.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071420
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K12D9.13 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3006555:3007950:-1 gene:K12D9.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022490 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3007194-3010395(-) 100.0 100.0
Public Domain and Genome References
Ensembl K12D9.13
Sequence
Target Sequence 
>C. ELEGANS:184793_AT
gagtcattgcctacgagtcacatatatctatcgccagttttctcataaatttatttcatt
ttttcatcttaacacgaaagacaatgaggagctcttctgtgaatataattatggcagcgg
ttgcgatttttgatattttatcgctatcagttcaattgaaagtggtaatcatccggtgta
taacttcaatttcttgttgttctcttttgaactcatatggatcaattttgattgacatgt
acatctacaagcttaaggattattctcgcagatgttccacgtggctgtgtttctcaattg
cattaattcgaattctagtaattcgatatcctttttcacggaaacttgaaaaattatccc
ttccaaaatcctccctgtttgtgattcttagtgtttcactgggaagccttccaatcaata
ttttaaatgcatttgaaaatgaaattcgaccacaaaacaaacaatttccatgtttcccaa
atgatacaacatcatacgcactggtttatacggactttttcacaaaaaataatgggttcc
tcgtcaagatttccacagccagcaatacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCATTGCCTACGAGTCACATAT 373 399 1343 Antisense
ATATATCTATCGCCAGTTTTCTCAT 667 19 1364 Antisense
GGCAGCGGTTGCGATTTTTGATATT 352 535 1455 Antisense
GGTAATCATCCGGTGTATAACTTCA 467 503 1506 Antisense
AACTTCAATTTCTTGTTGTTCTCTT 383 139 1524 Antisense
GATTATTCTCGCAGATGTTCCACGT 572 429 1600 Antisense
ACGTGGCTGTGTTTCTCAATTGCAT 635 95 1621 Antisense
AAATCCTCCCTGTTTGTGATTCTTA 565 117 1708 Antisense
AGTGTTTCACTGGGAAGCCTTCCAA 437 59 1732 Antisense
CATACGCACTGGTTTATACGGACTT 504 209 1835 Antisense
AGATTTCCACAGCCAGCAATACAAC 409 65 1889 Antisense
Sequence Source Affymetrix Proprietary Database