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[184792_at]

Description T26C11.3 /REP_DB=WormBase Gene ID /WP=CE05022 /TR=Q22808 /GB=AAC48212.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 10
(-3)
A 		10.9
(-2.3)
A 		13.2
(-0.4)
A 		17.3
(3)
A 		7
B 15.9
(3)
A 		13.8
(1.6)
A 		14
(1.7)
A 		6.8
(-3)
A 		9
C 15.7
(2.6)
A 		16.3
(3)
A 		7.5
(-3)
A 		10.3
(-1.1)
A 		9
avr 13.9
(3) 		13.7
(2.5) 		11.6
(-2.8) 		11.5
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 12
(-1.3)
A 		11.9
(-1.4)
A 		6.1
(-2.6)
A 		3.9
(-3)
A 		5.3
(-2.7)
A 		33.3
(3)
A 		29
B 12.1
(3)
A 		5.2
(-2.7)
A 		4.8
(-3)
A 		9.6
(0.9)
A 		5.3
(-2.6)
A 		9.6
(0.9)
A 		7
C 15.3
(3)
A 		5.4
(-1.8)
A 		11.9
(1.4)
A 		8.4
(-0.3)
A 		5
(-1.9)
A 		2.8
(-3)
A 		13
avr 13.1
(1.7) 		7.5
(-1.6) 		7.6
(-1.6) 		7.3
(-1.7) 		5.2
(-3) 		15.2
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.6
(3)
A 		2.4
(-3)
A 		3.5
(2.5)
A 		2.5
(-2.5)
A 		1
B 5.1
(3)
A 		3.4
(0.2)
A 		3.2
(-0.2)
A 		1.5
(-3)
A 		4
C 5.2
(3)
A 		4.7
(2.1)
A 		2.6
(-1.5)
A 		1.7
(-3)
A 		4
avr 4.6
(3) 		3.5
(0.6) 		3.1
(-0.3) 		1.9
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 2.2
(-2)
A 		4.2
(-0.3)
A 		1.3
(-2.7)
A 		1
(-3)
A 		1.6
(-2.5)
A 		8.1
(3)
A 		7
B 4.2
(3)
A 		1.7
(-2)
A 		1.2
(-3)
A 		2.5
(-0.4)
A 		2.2
(-1)
A 		3.6
(1.8)
A 		3
C 5.7
(3)
A 		1.6
(-2.1)
A 		3
(-0.4)
A 		1.7
(-2)
A 		1.6
(-2.1)
A 		0.9
(-3)
A 		5
avr 4
(2.5) 		2.5
(-1.1) 		1.8
(-2.8) 		1.7
(-3) 		1.8
(-2.8) 		4.2
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18518
Sequence Type Exemplar sequence
Representative Public ID T26C11.3 NCBI
Target Description T26C11.3 /REP_DB=WormBase Gene ID /WP=CE05022 /TR=Q22808 /GB=AAC48212.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075937 NCBI Caenorhabditis elegans T26C11.3 (T26C11.3) mRNA, complete cds. 11/11 None
T26C11.3 ENSEMBL cdna:known chromosome:CEL140:X:1837450:1839722:-1 gene:T26C11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1837449-1839722(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26C11.3
Entrez Gene 188919 Entrez gene
SwissProt Q22808 EMBL-EBI
WormBase CE05022 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508338 T26C11.3 [Caenorhabditis elegans] gb|AAC48212.1| Hypothetical protein T26C11.3 [Caenorhabditis elegans] 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:184792_AT
aaaagaagctagagttcgccaccgacgtacagctggaggcttttcaaagaatacacagta
gaatccacgtacatcccgaaagtagaaaaagccaacagcttcttcctggaaacggacagt
gttataattcgcttcatccagctcaactctttttccgaggaattggtgctcccggagccg
ctctattgattatttcaacttctcaacaccaatgcactgtgcctcccagtaattacgagc
cga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGAAGCTAGAGTTCGCCACCGA 99 131 20 Antisense
CCACCGACGTACAGCTGGAGGCTTT 700 271 38 Antisense
TAGAATCCACGTACATCCCGAAAGT 511 651 78 Antisense
AAAAGCCAACAGCTTCTTCCTGGAA 698 131 106 Antisense
GACAGTGTTATAATTCGCTTCATCC 280 369 134 Antisense
TATAATTCGCTTCATCCAGCTCAAC 294 661 142 Antisense
CAGCTCAACTCTTTTTCCGAGGAAT 208 203 158 Antisense
TCCGAGGAATTGGTGCTCCCGGAGC 209 591 173 Antisense
CGGAGCCGCTCTATTGATTATTTCA 523 243 192 Antisense
TTCTCAACACCAATGCACTGTGCCT 460 691 219 Antisense
GTGCCTCCCAGTAATTACGAGCCGA 283 477 238 Antisense
Sequence Source Affymetrix Proprietary Database