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[184791_at]

Description F46F5.12 /REP_DB=WormBase Gene ID /WP=CE19428 /TR=Q9TXX8 /GB=AAC78190.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 6.6
(1.5)
A 		3.7
(-3)
A 		4.8
(-1.3)
A 		7.6
(3)
A 		4
B 36.4
(3)
A 		12
(-2.5)
A 		10.8
(-2.8)
A 		9.7
(-3)
A 		27
C 6
(-2.5)
A 		31.2
(3)
A 		3.9
(-3)
A 		19.5
(0.4)
A 		27
avr 16.3
(3) 		15.6
(2.6) 		6.5
(-3) 		12.3
(0.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 9.8
(-2.1)
A 		4.6
(-3)
A 		11.7
(-1.8)
A 		15.3
(-1.2)
A 		40.7
(3)
A 		10.3
(-2.1)
A 		36
B 2.1
(-3)
A 		27.8
(0.3)
A 		49.1
(3)
A 		11.2
(-1.8)
A 		15.5
(-1.3)
A 		9.9
(-2)
A 		47
C 6
(-2.7)
A 		17.9
(-1.1)
A 		4.9
(-2.8)
A 		47.4
(3)
A 		3.8
(-3)
A 		7.6
(-2.5)
A 		44
avr 6
(-3) 		16.8
(0.5) 		21.9
(2.1) 		24.6
(3) 		20
(1.5) 		9.3
(-1.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.4
(3)
A 		0.8
(-3)
A 		1.2
(-1.5)
A 		1.1
(-1.9)
A 		2
B 11.6
(3)
A 		3
(-2.4)
A 		2.5
(-2.7)
A 		2.1
(-3)
A 		10
C 2
(-2.5)
A 		9
(3)
A 		1.4
(-3)
A 		3.3
(-1.5)
A 		8
avr 5.3
(3) 		4.3
(1.3) 		1.7
(-3) 		2.2
(-2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		1.6
(-3)
A 		2.5
(-2.5)
A 		3.9
(-1.7)
A 		12.3
(3)
A 		2.5
(-2.5)
A 		11
B 0.7
(-3)
A 		9.3
(1.6)
A 		11.9
(3)
A 		3
(-1.8)
A 		6.3
(-0)
A 		3.7
(-1.4)
A 		11
C 2.2
(-2.3)
A 		5.5
(0.1)
A 		1.2
(-3)
A 		9.5
(3)
A 		1.2
(-3)
A 		2.5
(-2.1)
A 		8
avr 1.6
(-3) 		5.5
(1.7) 		5.2
(1.3) 		5.5
(1.7) 		6.6
(3) 		2.9
(-1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4056
Sequence Type Exemplar sequence
Representative Public ID F46F5.12 NCBI
Target Description F46F5.12 /REP_DB=WormBase Gene ID /WP=CE19428 /TR=Q9TXX8 /GB=AAC78190.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061415 NCBI Caenorhabditis elegans F46F5.12 (F46F5.12) mRNA, complete cds. 11/11 None
F46F5.12 ENSEMBL cdna:known chromosome:CEL140:II:807417:808076:1 gene:F46F5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029520 4/11 Cross Hyb Matching Probes None
GENEFINDER00000029536 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:807416-808076(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F5.12
Entrez Gene 185865 Entrez gene
SwissProt Q9TXX8 EMBL-EBI
WormBase CE19428 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78190 Hypothetical protein F46F5.12 [Caenorhabditis elegans] ref|NP_493816.1| F46F5.12 [Caenorhabditis elegans] 7.0E-64
blast AAC48047 Hypothetical protein K04A8.1 [Caenorhabditis elegans] ref|NP_504669.1| K04A8.1 [Caenorhabditis elegans] 8.0E-39
blast CAE71910 Hypothetical protein CBG18972 [Caenorhabditis briggsae] 7.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 7.1E-64
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 5.4E-7
Sequence
Target Sequence 
>C. ELEGANS:184791_AT
acagcaacttggaggtctagcatataacgatggaatgagcggtgttgtggttggaagtat
gcagccttgggtggaagtttctgctcttcggagtggggcatcaaaggtcctgacagttga
atataacaatctaaccattcaagaagagttcaaaaaccggatgtctgcaattcttcccat
cgattttgttacaaactggcatcaatacgccggaaagtttgactttgccgcttcattctc
atctctcgagcattctggattaggaagatacggtgagccattggatccaatcgaacggct
taattccgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCAACTTGGAGGTCTAGCATAT 503 107 21 Antisense
GAATGAGCGGTGTTGTGGTTGGAAG 410 331 53 Antisense
TGGGTGGAAGTTTCTGCTCTTCGGA 635 551 88 Antisense
TGCTCTTCGGAGTGGGGCATCAAAG 492 579 102 Antisense
GGGGCATCAAAGGTCCTGACAGTTG 594 497 115 Antisense
AAACCGGATGTCTGCAATTCTTCCC 543 125 174 Antisense
AATTCTTCCCATCGATTTTGTTACA 269 177 189 Antisense
TACAAACTGGCATCAATACGCCGGA 333 641 210 Antisense
GAAAGTTTGACTTTGCCGCTTCATT 701 359 233 Antisense
GATACGGTGAGCCATTGGATCCAAT 508 423 287 Antisense
CAATCGAACGGCTTAATTCCGCACC 578 165 308 Antisense
Sequence Source Affymetrix Proprietary Database