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[184790_at]

Description F09E5.12 /REP_DB=WormBase Gene ID /WP=CE02607 /TR=Q19261 /GB=AAA79352.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 06      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 80      6grp_total > 06      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 287.1
(3)
P 		193.2
(-3)
P 		193.5
(-3)
P 		206.9
(-2.1)
P 		94
B 256
(3)
P 		211.9
(0.4)
P 		169.3
(-2.2)
P 		155.2
(-3)
P 		101
C 277.9
(3)
P 		224.1
(0.3)
P 		168.9
(-2.4)
P 		157.3
(-3)
P 		121
avr 273.7
(3) 		209.7
(-0.8) 		177.2
(-2.8) 		173.1
(-3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 306.1
(3)
P 		207.9
(-0.2)
P 		201.7
(-0.4)
P 		176.5
(-1.2)
P 		161.9
(-1.7)
P 		120.2
(-3)
P 		186
B 287.6
(3)
P 		214.1
(-0.1)
P 		203.1
(-0.6)
P 		184.2
(-1.4)
P 		175
(-1.7)
P 		145.2
(-3)
P 		142
C 253.1
(3)
P 		207.8
(0.7)
P 		192.8
(-0)
P 		221.2
(1.4)
P 		147.5
(-2.3)
P 		133.7
(-3)
P 		119
avr 282.3
(3) 		209.9
(0.1) 		199.2
(-0.3) 		194
(-0.5) 		161.5
(-1.9) 		133
(-3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 104.5
(3)
P 		41.9
(-2.1)
P 		50.6
(-1.4)
P 		30.3
(-3)
P 		74
B 81.6
(3)
P 		52.3
(-0.6)
P 		39.2
(-2.2)
P 		33.1
(-3)
P 		49
C 92
(3)
P 		64.4
(0.5)
P 		58.9
(-0)
P 		26.5
(-3)
P 		66
avr 92.7
(3) 		52.9
(-0.8) 		49.6
(-1.1) 		30
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 56.4
(0.6)
P 		73.9
(3)
P 		43.9
(-1)
P 		44.8
(-0.9)
P 		48.8
(-0.4)
P 		29.3
(-3)
P 		45
B 100.1
(3)
P 		71.3
(-0.4)
P 		49.3
(-2.9)
P 		48.8
(-3)
P 		71.1
(-0.4)
P 		54.1
(-2.4)
P 		51
C 93.8
(3)
P 		63.4
(-0.7)
P 		49.1
(-2.4)
P 		44.5
(-3)
P 		47.7
(-2.6)
P 		44.7
(-3)
P 		49
avr 83.4
(3) 		69.5
(1) 		47.4
(-2.3) 		46
(-2.5) 		55.9
(-1.1) 		42.7
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4603
Sequence Type Exemplar sequence
Representative Public ID F09E5.12 NCBI
Target Description F09E5.12 /REP_DB=WormBase Gene ID /WP=CE02607 /TR=Q19261 /GB=AAA79352.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062606 NCBI Caenorhabditis elegans F09E5.12 (F09E5.12) mRNA, complete cds. 11/11 None
SNAP00000044017 ENSEMBL cdna:SNAP chromosome:CEL140:II:5367912:5369070:-1 11/11 None
GENEFINDER00000044039 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5367912:5369070:-1 11/11 None
F09E5.12 ENSEMBL cdna:known chromosome:CEL140:II:5367912:5369070:-1 gene:F09E5.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5367909-5369068(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09E5.12
Entrez Gene 184243 Entrez gene
SwissProt Q19261 EMBL-EBI
WormBase CE02607 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA79352 Hypothetical protein F09E5.12 [Caenorhabditis elegans] ref|NP_495007.1| F09E5.12 [Caenorhabditis elegans] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:184790_AT
agccatcccatccagcgaatattggcaacttattagctggtcaacctgctccagtggcgg
ttgtcagtcaaggtattgcacactatattccaccacaccaaaatctacagaacatgcctg
ttcctcgtccagcaccggcacaacgtgaaaatgaagatgacgaggatgttgaaatagacg
tcgagaaagatgatgatgaaccagaagatccagatggaagaaactctgtctcatcgaacg
ctggttcggataatagtatgagaagtccatcgttttcaccaccttctccagcctactctc
cagtatcaccgacatattctaccacttcggacgagcaagaagctgctgaaccaccgattc
caattgcagcaagatcaccagccttggctcgccaacaaaatgaccttcctcggcgtccaa
tcccattaccaccaaaccgagatcactggacgggacatccaacactctactacaacagtc
catacagctttccacgtcgcccacgtccaaatgaccgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCATCCCATCCAGCGAATATTGG 61 85 362 Antisense
CTTATTAGCTGGTCAACCTGCTCCA 136 223 390 Antisense
GGTATTGCACACTATATTCCACCAC 451 505 433 Antisense
TACAGAACATGCCTGTTCCTCGTCC 196 643 467 Antisense
AAGAAACTCTGTCTCATCGAACGCT 576 151 579 Antisense
ATGAGAAGTCCATCGTTTTCACCAC 41 47 619 Antisense
GACATATTCTACCACTTCGGACGAG 576 369 672 Antisense
TGAACCACCGATTCCAATTGCAGCA 682 573 708 Antisense
CCAACAAAATGACCTTCCTCGGCGT 378 273 753 Antisense
TACAACAGTCCATACAGCTTTCCAC 93 643 832 Antisense
TCGCCCACGTCCAAATGACCGGGAA 284 599 858 Antisense
Sequence Source Affymetrix Proprietary Database