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[184788_at]

Description F49H12.5 /REP_DB=WormBase Gene ID /WP=CE20835 /TR=Q9N5S7 /GB=AAF39830.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 45      6grp_total > 61      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2112
1 2 3 4 range
A 538.4
(-2.2)
P 		1946.8
(2.7)
P 		2027.3
(3)
P 		301.3
(-3)
P 		1726
B 542.7
(-1.9)
P 		1962.3
(3)
P 		1882.2
(2.7)
P 		238.5
(-3)
P 		1724
C 621.8
(-1.9)
P 		2088
(2.3)
P 		2350.4
(3)
P 		239
(-3)
P 		2111
avr 567.6
(-2) 		1999
(2.7) 		2086.6
(3) 		259.6
(-3) 		1827

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3575
1 2 3 4 5 6 range
A 1693.9
(-1.2)
P 		1714.1
(-1.2)
P 		2610.9
(0.5)
P 		3866.2
(3)
P 		1905.3
(-0.8)
P 		797.1
(-3)
P 		3069
B 1645.2
(-1.1)
P 		1431.3
(-1.6)
P 		2928.3
(1.8)
P 		3450.4
(3)
P 		2189.8
(0.1)
P 		814.5
(-3)
P 		2636
C 1670.4
(-1.9)
P 		1656.9
(-1.9)
P 		2949.2
(0.4)
P 		4372.4
(3)
P 		1720.7
(-1.8)
P 		1045.8
(-3)
P 		3327
avr 1669.8
(-1.4) 		1600.8
(-1.6) 		2829.5
(0.9) 		3896.3
(3) 		1938.6
(-0.9) 		885.8
(-3) 		3011
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 779
1 2 3 4 range
A 196
(-1.1)
P 		422.6
(1.7)
P 		530
(3)
P 		44.1
(-3)
P 		486
B 173.1
(-1.3)
P 		484.6
(3)
P 		436.1
(2.3)
P 		50.8
(-3)
P 		434
C 205.8
(-1.7)
P 		600.3
(1.3)
P 		819.2
(3)
P 		40.3
(-3)
P 		779
avr 191.6
(-1.4) 		502.5
(2) 		595.1
(3) 		45.1
(-3) 		550

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 786
1 2 3 4 5 6 range
A 312.2
(-2.1)
P 		609.6
(0.2)
P 		568.6
(-0.1)
P 		980.5
(3)
P 		574.9
(-0.1)
P 		194.1
(-3)
P 		786
B 572.5
(-0.4)
P 		476.4
(-1.3)
P 		711.1
(1)
P 		913.9
(3)
P 		889.7
(2.8)
P 		303.7
(-3)
P 		610
C 619.2
(0.1)
P 		505.6
(-1.2)
P 		750.6
(1.5)
P 		879.3
(3)
P 		556.8
(-0.7)
P 		350.1
(-3)
P 		529
avr 501.3
(-1) 		530.5
(-0.7) 		676.8
(0.7) 		924.6
(3) 		673.8
(0.7) 		282.6
(-3) 		642
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18602
Sequence Type Exemplar sequence
Representative Public ID F49H12.5 NCBI
Target Description F49H12.5 /REP_DB=WormBase Gene ID /WP=CE20835 /TR=Q9N5S7 /GB=AAF39830.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075980 NCBI Caenorhabditis elegans F49H12.5 (F49H12.5) mRNA, complete cds. 11/11 None
SNAP00000015649 ENSEMBL cdna:SNAP chromosome:CEL140:X:2074449:2075721:1 11/11 None
GENEFINDER00000015659 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2074449:2075721:1 11/11 None
F49H12.5 ENSEMBL cdna:known chromosome:CEL140:X:2074442:2075924:1 gene:F49H12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2074448-2075650(+) 66.28 90.83
Public Domain and Genome References
Gene Title
Ensembl F49H12.5
Entrez Gene 180520 Entrez gene
SwissProt Q9N5S7 EMBL-EBI
WormBase CE20835 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39830 Hypothetical protein F49H12.5 [Caenorhabditis elegans] ref|NP_508381.1| F49H12.5 [Caenorhabditis elegans] 8.0E-73
blast AAF39830 Hypothetical protein F49H12.5 [Caenorhabditis elegans] ref|NP_508381.1| F49H12.5 [Caenorhabditis elegans] 1.0E-71
blast CAE68360 Hypothetical protein CBG14099 [Caenorhabditis briggsae] 1.0E-70
blast CAE68360 Hypothetical protein CBG14099 [Caenorhabditis briggsae] 2.0E-69
blast CAB55026 Hypothetical protein Y57A10A.23 [Caenorhabditis elegans] ref|NP_496599.1| Y57A10A.23 [Caenorhabditis elegans] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:184788_AT
aataaaccaatcttcttcctcattcacaagacctggtgtggagcttgcaaatctctcaag
cgcgaacttaaaagttcaccaaaaaccgatgagcttatcattctctctcgtaaatttgtc
atggtgaacgtagaagatgatgaggagccagaggatccaaaatactcaccagatggagga
tacattccaagaattttattccttgacaccgacggaaacccattgaagactaacaacgag
cgcaagtataagaataacaagtacttctacccactcccagctcaaattatcgacggaatg
gagagagctcttttggagtttggaactgatgaggaaccagccaagggtgaggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAAACCAATCTTCTTCCTCATTC 74 173 160 Antisense
TCTTCCTCATTCACAAGACCTGGTG 643 617 173 Antisense
AGACCTGGTGTGGAGCTTGCAAATC 340 69 188 Antisense
TGCAAATCTCTCAAGCGCGAACTTA 591 577 205 Antisense
GCTTATCATTCTCTCTCGTAAATTT 497 303 252 Antisense
GAGGATCCAAAATACTCACCAGATG 675 403 310 Antisense
AGAATTTTATTCCTTGACACCGACG 410 75 349 Antisense
GACACCGACGGAAACCCATTGAAGA 541 365 364 Antisense
GAATAACAAGTACTTCTACCCACTC 695 325 411 Antisense
CCACTCCCAGCTCAAATTATCGACG 427 273 430 Antisense
GAGGAACCAGCCAAGGGTGAGGTCA 279 405 490 Antisense
Sequence Source Affymetrix Proprietary Database