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[184787_at]

Description F46G11.2 /REP_DB=WormBase Gene ID /WP=CE04585 /TR=Q20484 /GB=AAA81396.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_high_8_8 > 46      6grp_highest_nonorm > 62      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 78.9
(-2.3)
P 		493.9
(2.6)
P 		525.4
(3)
P 		15.2
(-3)
A 		510
B 89.9
(-3)
P 		430.6
(2)
P 		503
(3)
P 		87.6
(-3)
P 		415
C 82.5
(-3)
P 		479
(2.4)
P 		523.1
(3)
P 		119.4
(-2.5)
P 		441
avr 83.8
(-2.9) 		467.8
(2.3) 		517.2
(3) 		74.1
(-3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 540
1 2 3 4 5 6 range
A 303.8
(-1.2)
P 		283.2
(-1.5)
P 		496.2
(1.7)
P 		579.5
(3)
P 		550.5
(2.6)
P 		183.9
(-3)
P 		396
B 384.6
(-1.1)
P 		366.5
(-1.3)
P 		509.2
(0.4)
P 		723.7
(3)
P 		537.4
(0.7)
P 		230.1
(-3)
P 		494
C 298.9
(-2.2)
P 		394.9
(-1)
P 		449.6
(-0.3)
P 		708.1
(3)
P 		429.3
(-0.5)
P 		234.6
(-3)
P 		474
avr 329.1
(-1.5) 		348.2
(-1.3) 		485
(0.6) 		670.4
(3) 		505.7
(0.8) 		216.2
(-3) 		454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 28.7
(-1.8)
P 		107.2
(1.7)
P 		137.3
(3)
P 		2.2
(-3)
A 		135
B 28.7
(-2.4)
P 		106.3
(2.4)
P 		116.6
(3)
P 		18.7
(-3)
P 		98
C 27.3
(-2.7)
P 		137.7
(1.4)
P 		182.3
(3)
P 		20.1
(-3)
P 		162
avr 28.2
(-2.3) 		117.1
(1.7) 		145.4
(3) 		13.7
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 56
(-2.4)
P 		100.7
(-0.2)
P 		108.1
(0.1)
P 		147
(2.1)
P 		166.1
(3)
P 		44.8
(-3)
P 		121
B 133.8
(-0.8)
P 		122
(-1.4)
P 		123.7
(-1.3)
P 		191.7
(1.8)
P 		218.4
(3)
P 		85.8
(-3)
P 		133
C 110.8
(0)
P 		120.5
(0.9)
P 		114.4
(0.4)
P 		142.4
(3)
P 		138.9
(2.7)
P 		78.5
(-3)
P 		64
avr 100.2
(-1.3) 		114.4
(-0.4) 		115.4
(-0.4) 		160.4
(2.2) 		174.5
(3) 		69.7
(-3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17065
Sequence Type Exemplar sequence
Representative Public ID F46G11.2 NCBI
Target Description F46G11.2 /REP_DB=WormBase Gene ID /WP=CE04585 /TR=Q20484 /GB=AAA81396.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076571(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076571 NCBI Caenorhabditis elegans F46G11.2 (F46G11.2) mRNA, complete cds. 10/11 None
SNAP00000029324 ENSEMBL cdna:SNAP chromosome:CEL140:X:5788121:5790210:1 10/11 None
GENEFINDER00000029328 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5788121:5797015:1 11/11 None
F46G11.2 ENSEMBL cdna:known chromosome:CEL140:X:5786486:5790275:1 gene:F46G11.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076572 1/11 Cross Hyb Matching Probes None
F46G11.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5786485-5791858(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46G11.2
Entrez Gene 185878 Entrez gene
SwissProt Q5WRT1 EMBL-EBI
WormBase CE38520 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28343 Hypothetical protein F46G11.2 [Caenorhabditis elegans] ref|NP_508972.2| F46G11.2 [Caenorhabditis elegans] 0.0
blast T16374 hypothetical protein F46G11.2 - Caenorhabditis elegans 0.0
blast CAE68800 Hypothetical protein CBG14750 [Caenorhabditis briggsae] 0.0
blast AAV28342 Hypothetical protein F46G11.1 [Caenorhabditis elegans] ref|NP_508973.2| F46G11.1 [Caenorhabditis elegans] 0.0
blast T16375 hypothetical protein F46G11.1 - Caenorhabditis elegans 0.0
blast CAE68801 Hypothetical protein CBG14751 [Caenorhabditis briggsae] 0.0
blast CAE68800 Hypothetical protein CBG14750 [Caenorhabditis briggsae] 1.0E-168
blast AAV28343 Hypothetical protein F46G11.2 [Caenorhabditis elegans] ref|NP_508972.2| F46G11.2 [Caenorhabditis elegans] 1.0E-166
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
F46G11.2 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:184787_AT
ggtgattcccgtgcaaacagcacacggatccaaaacgtggagtagcaaccctgagacaaa
atcattacaaccgctggaaatcagaaatgatcttgtctctagctggactcaaatgccatt
tttcgcgcctccaactattccaccagccccgccgcttgctttcaaatctgtgccttcact
aattttacaaccgattcaagcaccacagttggagaatggaatattcttctcgacagataa
attcaatttcctcaaggacttcaatccgatcaagcgattcagacgatctcctgattacta
cgatcagatcgacgaaaagaagaaaccttcaaaaacttctgattcatctaaaaaatcgtc
tggcaatactgatgattactatggaaactttgatagtgacatagatgagaaagatgaaat
tgaaaccaccggtctgaaacagtgcgtccattttctgggacttggtaccttgtcaaaaac
cattagcaaactgcagctcaaaaccatggaagacgaactcgactcggatctctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGATTCCCGTGCAAACAGCACAC 166 501 1029 Antisense
AACGTGGAGTAGCAACCCTGAGACA 207 135 1062 Antisense
TGATCTTGTCTCTAGCTGGACTCAA 203 565 1116 Antisense
ACTCAAATGCCATTTTTCGCGCCTC 421 101 1135 Antisense
TGCTTTCAAATCTGTGCCTTCACTA 409 579 1185 Antisense
GTGCCTTCACTAATTTTACAACCGA 41 479 1198 Antisense
CAAGGACTTCAATCCGATCAAGCGA 681 181 1281 Antisense
CAGACGATCTCCTGATTACTACGAT 189 205 1308 Antisense
ACCACCGGTCTGAAACAGTGCGTCC 424 83 1453 Antisense
CAGTGCGTCCATTTTCTGGGACTTG 606 207 1468 Antisense
AGACGAACTCGACTCGGATCTCTAC 439 71 1539 Antisense
Sequence Source Affymetrix Proprietary Database