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[184786_at]

Description Y49E10.17 /REP_DB=WormBase Gene ID /WP=CE22232 /TR=Q9XTU4 /GB=CAB11553.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 24.2
(-3)
A 		31.9
(-1.6)
A 		26.6
(-2.6)
A 		58.1
(3)
A 		34
B 34.4
(1.5)
A 		43.2
(3)
A 		7.3
(-3)
A 		41
(2.6)
A 		36
C 45.6
(2.1)
A 		52.3
(3)
A 		5.2
(-3)
A 		14.8
(-1.8)
A 		47
avr 34.7
(1.4) 		42.5
(3) 		13
(-3) 		38
(2.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 61.7
(3)
A 		14.2
(-3)
A 		16.7
(-2.7)
A 		39.2
(0.2)
A 		42.7
(0.6)
A 		59
(2.7)
P 		48
B 41.1
(0)
A 		21.5
(-2)
A 		11.1
(-3)
A 		16.6
(-2.4)
A 		63.4
(2.3)
P 		70.7
(3)
P 		60
C 41.1
(0.8)
A 		18.3
(-1.8)
A 		47.5
(1.5)
A 		24.2
(-1.1)
A 		7.6
(-3)
A 		60.3
(3)
P 		53
avr 48
(1) 		18
(-3) 		25.1
(-2.1) 		26.7
(-1.8) 		37.9
(-0.4) 		63.3
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.8
(3)
A 		6.9
(-3)
A 		7
(-2.7)
A 		8.5
(2.1)
A 		2
B 11
(3)
A 		10.7
(2.8)
A 		1.7
(-3)
A 		8.7
(1.5)
A 		9
C 15.1
(3)
A 		15
(3)
A 		1.8
(-3)
A 		2.5
(-2.7)
A 		13
avr 11.6
(3) 		10.9
(2.5) 		3.5
(-3) 		6.6
(-0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.4
(1.3)
A 		5.1
(-2.2)
A 		3.6
(-3)
A 		9.9
(0.5)
A 		12.9
(2.2)
A 		14.4
(3)
P 		11
B 14.3
(-0.1)
A 		7.1
(-1.9)
A 		2.7
(-3)
A 		4.4
(-2.6)
A 		25.7
(2.8)
P 		26.4
(3)
P 		24
C 15.2
(1.3)
A 		5.6
(-1.9)
A 		12.1
(0.3)
A 		4.9
(-2.2)
A 		2.5
(-3)
A 		20.2
(3)
P 		18
avr 13.6
(0.2) 		5.9
(-3) 		6.1
(-2.9) 		6.4
(-2.8) 		13.7
(0.2) 		20.3
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7831
Sequence Type Exemplar sequence
Representative Public ID Y49E10.17 NCBI
Target Description Y49E10.17 /REP_DB=WormBase Gene ID /WP=CE22232 /TR=Q9XTU4 /GB=CAB11553.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067221 NCBI Caenorhabditis elegans Y49E10.17 (Y49E10.17) mRNA, complete cds. 11/11 None
GENEFINDER00000016119 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12436427:12440931:1 11/11 None
SNAP00000016085 ENSEMBL cdna:SNAP chromosome:CEL140:III:12437490:12440931:1 11/11 None
Y49E10.17 ENSEMBL cdna:known chromosome:CEL140:III:12436427:12440931:1 gene:Y49E10.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12436422-12440927(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49E10.17
Entrez Gene 176670 Entrez gene
SwissProt Q9XTU4 EMBL-EBI
WormBase CE22232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB11553 Hypothetical protein Y49E10.17 [Caenorhabditis elegans] ref|NP_499622.1| Y49E10.17 [Caenorhabditis elegans] 0.0
blast AAB66158 Hypothetical protein T28C12.3 [Caenorhabditis elegans] ref|NP_504615.1| T28C12.3 [Caenorhabditis elegans] 7.0E-45
blast CAB07161 Hypothetical protein C06H5.1 [Caenorhabditis elegans] ref|NP_741646.1| C06H5.1 [Caenorhabditis elegans] 1.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.4E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.4E-17
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.4E-17
Sequence
Target Sequence 
>C. ELEGANS:184786_AT
gcatggtcgagagttgagcctggatagttttatggtgaccacctgggaagaagacatgga
tttatacgatcctctcatctctctccttcatcaaattggaagtgttccagccaaatatgt
gattatcgaaggagcaacttccgagaagacagcccaaatcctccaacattttgaggctgg
agttttgaaaaagttgcgaatcagagctgatgtggccgatgcagcttccatccaacctct
ggtggcgctcgatcaatggaaatcagtggacaaacttcatttgacctgtcacgccaaaca
attccagttcttcgtcaagcatctcaagcatctcaaggcaatgaaagtcgacttttttgg
acacaatttatcgaagggagatatgatgaaatttcgcgatgaagttatcgtgaaatcgag
ccgtttcaaagtctacaagttcaagcgagttcactacagttcgaaagagttgctgcaagt
gctatgtccgatggagtctccaatcgattcatttggcaagatcgacattgaaaccgacaa
cgctacattttccatcgagttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGGTCGAGAGTTGAGCCTGGAT 570 309 987 Antisense
GGATTTATACGATCCTCTCATCTCT 669 509 1044 Antisense
CATCTCTCTCCTTCATCAAATTGGA 136 213 1062 Antisense
CAGCCCAAATCCTCCAACATTTTGA 183 203 1136 Antisense
GCTGATGTGGCCGATGCAGCTTCCA 520 295 1192 Antisense
CTCTGGTGGCGCTCGATCAATGGAA 223 231 1223 Antisense
AAACTTCATTTGACCTGTCACGCCA 53 129 1258 Antisense
GTCAAGCATCTCAAGCATCTCAAGG 52 465 1300 Antisense
AATCGAGCCGTTTCAAAGTCTACAA 650 167 1400 Antisense
TGCTGCAAGTGCTATGTCCGATGGA 331 583 1457 Antisense
ACGCTACATTTTCCATCGAGTTCGA 332 91 1526 Antisense
Sequence Source Affymetrix Proprietary Database