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[184785_at] 7TM chemoreceptor, sri family

Description K07E8.11 /REP_DB=WormBase Gene ID /WP=CE11906 /TR=O16693 /GB=AAB66147.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 28      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 61.8
(2.8)
A 		61.1
(2.4)
A 		62.1
(3)
A 		52.6
(-3)
A 		10
B 71.1
(3)
A 		66.3
(2)
A 		41.6
(-3)
A 		69.2
(2.6)
A 		30
C 54.3
(-1.2)
A 		72.9
(-0)
A 		26.5
(-3)
A 		120
(3)
A 		94
avr 62.4
(0.1) 		66.8
(0.8) 		43.4
(-3) 		80.6
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 65.1
(1.5)
A 		75.9
(3)
A 		33.1
(-3)
A 		65.6
(1.6)
A 		66.7
(1.7)
A 		51.8
(-0.4)
A 		43
B 55.3
(3)
A 		43.1
(1.6)
A 		4.5
(-3)
A 		45.8
(1.9)
A 		36.1
(0.7)
A 		44.3
(1.7)
A 		51
C 57
(0.3)
A 		84.1
(3)
A 		23.8
(-3)
A 		52.8
(-0.1)
A 		31.3
(-2.3)
A 		37.8
(-1.6)
A 		60
avr 59.1
(1.9) 		67.7
(3) 		20.5
(-3) 		54.7
(1.3) 		44.7
(0.1) 		44.6
(0.1) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 22.5
(3)
A 		13.3
(-0.7)
A 		16.2
(0.4)
A 		7.7
(-3)
A 		15
B 22.7
(3)
A 		16.4
(0.1)
A 		9.7
(-3)
A 		14.7
(-0.7)
A 		13
C 18
(1.5)
A 		21
(3)
A 		9.2
(-3)
A 		20.2
(2.6)
A 		12
avr 21.1
(3) 		16.9
(0.3) 		11.7
(-3) 		14.2
(-1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12
(-1.5)
A 		27
(3)
A 		7.2
(-3)
A 		16.6
(-0.2)
A 		20.1
(0.9)
A 		12.6
(-1.4)
A 		20
B 19.3
(3)
A 		14.3
(1.4)
A 		1.1
(-3)
A 		12.1
(0.6)
A 		14.7
(1.5)
A 		16.5
(2.1)
A 		18
C 21.1
(1.6)
A 		25.7
(3)
A 		6.1
(-3)
A 		10.6
(-1.6)
A 		10.1
(-1.8)
A 		12.6
(-1)
A 		20
avr 17.5
(1.4) 		22.3
(3) 		4.8
(-3) 		13.1
(-0.2) 		15
(0.5) 		13.9
(0.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 184785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4898
Sequence Type Exemplar sequence
Representative Public ID K07E8.11 NCBI
Target Description K07E8.11 /REP_DB=WormBase Gene ID /WP=CE11906 /TR=O16693 /GB=AAB66147.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061384 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-46) (sri-46) mRNA, complete cds. 11/11 None
GENEFINDER00000018464 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:669404:670304:-1 11/11 None
K07E8.11 ENSEMBL cdna:known chromosome:CEL140:II:669512:671131:-1 gene:K07E8.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018457 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:669511-671131(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-46
Ensembl K07E8.11
Entrez Gene 187116 Entrez gene
SwissProt O16693 EMBL-EBI
WormBase CE11906 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66147 Serpentine receptor, class i protein 46 [Caenorhabditis elegans] ref|NP_493785.1| Serpentine Receptor, class I family member (sri-46) [Caenorhabditis elegans] 0.0
blast AAB66154 Serpentine receptor, class i protein 45 [Caenorhabditis elegans] ref|NP_493782.2| Serpentine Receptor, class I family member (sri-45) [Caenorhabditis elegans] 1.0E-128
blast AAB66147 Serpentine receptor, class i protein 46 [Caenorhabditis elegans] ref|NP_493785.1| Serpentine Receptor, class I family member (sri-46) [Caenorhabditis elegans] 1.0E-116
blast AAB66154 Serpentine receptor, class i protein 45 [Caenorhabditis elegans] ref|NP_493782.2| Serpentine Receptor, class I family member (sri-45) [Caenorhabditis elegans] 4.0E-83
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 4.0E-71
blast AAC68720 Serpentine receptor, class i protein 42 [Caenorhabditis elegans] ref|NP_494457.1| Serpentine Receptor, class I family member (sri-42) [Caenorhabditis elegans] 6.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-47
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-76
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493785.1 7 30-52,85-104,108-127,148-170,204-226,258-280,295-317
K07E8.11 7 30-52,85-104,108-127,148-170,204-226,258-280,295-317
GENEFINDER00000018464 5 41-63,95-117,148-170,180-202,223-245
Sequence
Target Sequence 
>C. ELEGANS:184785_AT
gcatgtcatcccggctagaatgtttcagtttctaatgtttctcgccttctcctttccgcc
attcgctgccttcttctggtaccatgctggaatttcagaagacttgttgccaggctttat
tgatagggtgttcccggaatataaatcaaagttctcgagcttgcacaactttacaatata
tcaactgaacttctctttgggtgtcgtcggtgttatgggatttacgggaatctttgtcgt
tttccaagccattgctatgacaacaatggacactatgaaaatgctcaaaggagcgagaaa
gacaatttcagcgcagagctatgaccgtcagagatctgcgatgaaaagtcttattgctca
gttcctagcttcatgtctactagttctacctgcagcttcgttctatgttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGTCATCCCGGCTAGAATGTTT 139 311 432 Antisense
TTCAGTTTCTAATGTTTCTCGCCTT 229 687 455 Antisense
CAGAAGACTTGTTGCCAGGCTTTAT 429 205 527 Antisense
GTTCTCGAGCTTGCACAACTTTACA 448 443 582 Antisense
ACTGAACTTCTCTTTGGGTGTCGTC 135 95 615 Antisense
GGTGTCGTCGGTGTTATGGGATTTA 197 499 631 Antisense
GAATCTTTGTCGTTTTCCAAGCCAT 47 325 659 Antisense
TCAGCGCAGAGCTATGACCGTCAGA 15 625 739 Antisense
ATTGCTCAGTTCCTAGCTTCATGTC 421 5 784 Antisense
CATGTCTACTAGTTCTACCTGCAGC 52 211 803 Antisense
TACCTGCAGCTTCGTTCTATGTTAT 696 649 818 Antisense
Sequence Source Affymetrix Proprietary Database